Locus 8620

Sequence ID X_DroMel_CAF1
Location 21,660,020 – 21,660,117
Length 97
Max. P 0.620789
window14171

overview

Window 1

Location 21,660,020 – 21,660,117
Length 97
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 84.10
Mean single sequence MFE -21.62
Consensus MFE -17.51
Energy contribution -17.03
Covariance contribution -0.48
Combinations/Pair 1.11
Mean z-score -1.58
Structure conservation index 0.81
SVM decision value 0.18
SVM RNA-class probability 0.620789
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21660020 97 + 22224390
AGCAUUUUAUGAACGAAAGAUCGAUUCGUGAAAGUGUGGCCAUCUUAUGUUAGUUAAGGCCUACCACCCGCUUCUC-CCAUCCCCCUGCACUACACCA
.(((((((((((((((....))).)))))))))(((.((((..((......))....))))...))).........-.........)))......... ( -20.20)
>DroSec_CAF1 3140 98 + 1
AGCAUUUUAUGAACGAAAGAUCGAUUCGUAAAAGUGUGGCCAUUUUAUGUUAGUUAAGGCCCACCACCCGCGCCUUUCUUUCCCCCUGCGCAACACCA
....((((((((((((....))).)))))))))(((.((((................))))))).....((((..............))))....... ( -23.03)
>DroSim_CAF1 3411 98 + 1
AGCAUUUUAUGAACGAAAGAUCGAUUCGUAAAAGUGUGGCCAUUUUAUGUUAGUUAAGGCCCACCACCCACGCCUUUCUUUCCCCCUGCGCAACACCA
.(((((((((((((((....))).)))))))))(((.((((................)))))))......................)))......... ( -20.89)
>DroEre_CAF1 3781 92 + 1
AGCAUUUUAUGAACGAUAGAUCGAUUCGUGAAAGUGUGGCCAU-UUAUGUUAGUAAAGGCCUACCACCCCC---UCUCUAUCCCC--CCCUUCCCCCA
....((((((((((((....))).)))))))))(((.((((.(-((((....)))))))))...)))....---...........--........... ( -20.00)
>DroYak_CAF1 3513 92 + 1
AGCAUUUUAUGAACGAAAGAUCGAUUCGUGAAAGUGUGGCCAUUUUAUGUUAGUUAAGGCCCACCACCCCC---UUUCCCACUA---ACAUUAUGCCG
.(((((((((((((((....))).)))))).))))))(((.((...((((((((.((((..........))---))....))))---)))).))))). ( -24.00)
>consensus
AGCAUUUUAUGAACGAAAGAUCGAUUCGUGAAAGUGUGGCCAUUUUAUGUUAGUUAAGGCCCACCACCCCC__CUUUCUAUCCCCCUGCACUACACCA
....((((((((((((....))).)))))))))(((.((((................))))))).................................. (-17.51 = -17.03 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:43 2006