Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,442,891 – 2,443,028 |
Length | 137 |
Max. P | 0.980656 |
Location | 2,442,891 – 2,443,011 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.06 |
Mean single sequence MFE | -42.83 |
Consensus MFE | -41.03 |
Energy contribution | -41.37 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.99 |
Structure conservation index | 0.96 |
SVM decision value | 1.87 |
SVM RNA-class probability | 0.980656 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2442891 120 + 22224390 UUAAACUUCCACUUCUAACCCUCAGCCGCUGAUAAACUAAUCAAAAUCUGGGGAGCAUACGAUGGCAAGUUCGAGAAGACCAUUUCGGGCCACAAGCUGGGCAUCAGCGAUGUGGCCUGG ...........(((((...((((((....((((......))))....))))))......(((........)))))))).......(((((((((.((((.....))))..))))))))). ( -39.90) >DroSec_CAF1 3802 120 + 1 UUAAACUUCCACUUCUACUCCUCAGCCGCUGAUAAACUAAUCAAAAUCUGGGGAGCCUACGAUGGCAAGUUCGAGAAGACCAUUUCGGGCCACAAGCUGGGCAUCAGCGAUGUGGCCUGG ...........(((((..(((((((....((((......))))....)))))))(((......))).......))))).......(((((((((.((((.....))))..))))))))). ( -44.60) >DroSim_CAF1 5955 120 + 1 UUAAACUUCCACUUCUAUCCCUCAGCCGCUGAUAAACUAAUCAAAAUCUGGGGAGCCUACGAUGGCAAGUUCGAGAAGACCAUUUCGGGCCACAAGCUGGGCAUCAGCGAUGUGGCCUGG ...........(((((.((((.(((....((((......))))....)))))))(((......))).......))))).......(((((((((.((((.....))))..))))))))). ( -44.00) >consensus UUAAACUUCCACUUCUAACCCUCAGCCGCUGAUAAACUAAUCAAAAUCUGGGGAGCCUACGAUGGCAAGUUCGAGAAGACCAUUUCGGGCCACAAGCUGGGCAUCAGCGAUGUGGCCUGG ...........(((((...((((((....((((......))))....)))))).(((......))).......))))).......(((((((((.((((.....))))..))))))))). (-41.03 = -41.37 + 0.33)
Location | 2,442,931 – 2,443,028 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 99.31 |
Mean single sequence MFE | -36.57 |
Consensus MFE | -35.50 |
Energy contribution | -35.83 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.95 |
Structure conservation index | 0.97 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.845234 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2442931 97 + 22224390 UCAAAAUCUGGGGAGCAUACGAUGGCAAGUUCGAGAAGACCAUUUCGGGCCACAAGCUGGGCAUCAGCGAUGUGGCCUGGAGCUCAGACUCGCGACU ......((((((((((...(((........)))..........(((((((((((.((((.....))))..)))))))))))))))...)))).)).. ( -34.50) >DroSec_CAF1 3842 97 + 1 UCAAAAUCUGGGGAGCCUACGAUGGCAAGUUCGAGAAGACCAUUUCGGGCCACAAGCUGGGCAUCAGCGAUGUGGCCUGGAGCUCAGACUCGCGACU ......((((((..(((......)))................((((((((((((.((((.....))))..))))))))))))))))))......... ( -37.60) >DroSim_CAF1 5995 97 + 1 UCAAAAUCUGGGGAGCCUACGAUGGCAAGUUCGAGAAGACCAUUUCGGGCCACAAGCUGGGCAUCAGCGAUGUGGCCUGGAGCUCAGACUCGCGACU ......((((((..(((......)))................((((((((((((.((((.....))))..))))))))))))))))))......... ( -37.60) >consensus UCAAAAUCUGGGGAGCCUACGAUGGCAAGUUCGAGAAGACCAUUUCGGGCCACAAGCUGGGCAUCAGCGAUGUGGCCUGGAGCUCAGACUCGCGACU ......((((((..(((......)))................((((((((((((.((((.....))))..))))))))))))))))))......... (-35.50 = -35.83 + 0.33)
Location | 2,442,931 – 2,443,028 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 99.31 |
Mean single sequence MFE | -32.77 |
Consensus MFE | -31.70 |
Energy contribution | -31.70 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.44 |
Structure conservation index | 0.97 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.521083 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2442931 97 - 22224390 AGUCGCGAGUCUGAGCUCCAGGCCACAUCGCUGAUGCCCAGCUUGUGGCCCGAAAUGGUCUUCUCGAACUUGCCAUCGUAUGCUCCCCAGAUUUUGA ....((((((.((((..((((((((((..((((.....)))).))))))).....)))....)))).))))))........................ ( -31.70) >DroSec_CAF1 3842 97 - 1 AGUCGCGAGUCUGAGCUCCAGGCCACAUCGCUGAUGCCCAGCUUGUGGCCCGAAAUGGUCUUCUCGAACUUGCCAUCGUAGGCUCCCCAGAUUUUGA ((((((((((.((((..((((((((((..((((.....)))).))))))).....)))....)))).)))))).......((....)).)))).... ( -33.30) >DroSim_CAF1 5995 97 - 1 AGUCGCGAGUCUGAGCUCCAGGCCACAUCGCUGAUGCCCAGCUUGUGGCCCGAAAUGGUCUUCUCGAACUUGCCAUCGUAGGCUCCCCAGAUUUUGA ((((((((((.((((..((((((((((..((((.....)))).))))))).....)))....)))).)))))).......((....)).)))).... ( -33.30) >consensus AGUCGCGAGUCUGAGCUCCAGGCCACAUCGCUGAUGCCCAGCUUGUGGCCCGAAAUGGUCUUCUCGAACUUGCCAUCGUAGGCUCCCCAGAUUUUGA ....((((((.((((..((((((((((..((((.....)))).))))))).....)))....)))).))))))........................ (-31.70 = -31.70 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:34 2006