Locus 8619

Sequence ID X_DroMel_CAF1
Location 21,650,030 – 21,650,150
Length 120
Max. P 0.845305
window14170

overview

Window 0

Location 21,650,030 – 21,650,150
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 96.11
Mean single sequence MFE -48.03
Consensus MFE -45.04
Energy contribution -45.27
Covariance contribution 0.23
Combinations/Pair 1.05
Mean z-score -2.05
Structure conservation index 0.94
SVM decision value 0.77
SVM RNA-class probability 0.845305
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21650030 120 + 22224390
GCUCACCUAUGCGGUGGCCAGCGCAUCGAAGCGAAUAUUUGUGAUCGCAGUAUCGCUCCUAAUCCUGGGCAACCCAGUGACGUGGGUCAAUUGCGUAGGCAUGACGCUGGCCAUUGUGGG
.....(((..((((((((((((((((.(.(((((....((((....))))..))))).)....((((.((((((((......)))))....))).)))).))).)))))))))))))))) ( -50.40)
>DroSim_CAF1 121 120 + 1
GCUCACCUAUGCGGUGGCCAGCGCAUCGAAGCGGAUAUUUGUGAUUGCAGUAUCGCUCCUAAUCCUGGGCAACCCAGUGACGUGGGUCAAUUGCGUAGGCAUGACGCUUGCCAUUUUGGG
(((((((((((((((((((.(((....(.((((.(((((.((....))))))))))).)...(((((((...))))).))))).)))).))))))))))..))).))...((.....)). ( -41.50)
>DroYak_CAF1 121 120 + 1
GCUCACCUAUGCGGUGGCCAGCGCAUCGAAGCGAAUAUUUGUGAUCGCAGUAUCGCUCCUAAUCCUGGGCAAUCCAGUCACGUGGGUCAAUUGCCUAGGCAUGACGCUGGCCAUUGUGGG
.....(((..((((((((((((((((.(.(((((....((((....))))..))))).)....(((((((((((((......)))))....)))))))).))).)))))))))))))))) ( -52.20)
>consensus
GCUCACCUAUGCGGUGGCCAGCGCAUCGAAGCGAAUAUUUGUGAUCGCAGUAUCGCUCCUAAUCCUGGGCAACCCAGUGACGUGGGUCAAUUGCGUAGGCAUGACGCUGGCCAUUGUGGG
.....(((..((((((((((((((((.(.(((((.((((.((....))))))))))).)....((((.((((((((......)))))....))).)))).))).)))))))))))))))) (-45.04 = -45.27 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:42 2006