Locus 8615

Sequence ID X_DroMel_CAF1
Location 21,410,274 – 21,410,391
Length 117
Max. P 0.565930
window14164

overview

Window 4

Location 21,410,274 – 21,410,391
Length 117
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 79.73
Mean single sequence MFE -14.52
Consensus MFE -9.43
Energy contribution -10.74
Covariance contribution 1.31
Combinations/Pair 1.14
Mean z-score -1.67
Structure conservation index 0.65
SVM decision value 0.06
SVM RNA-class probability 0.565930
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21410274 117 - 22224390
UUUUUGCAGCCUUCCUUCAGUUCCCUUCCACUGGCACUUUCUCUCUGCGGUCAUUUCCCCCUAUUUUCGUACUUGUGUACCAACCCCCCUCCCCCCCUUCUAUACACACAUGUG---GUG
...((((((.......(((((........)))))..........))))))..................((((....))))........................(((....)))---... ( -12.43)
>DroSec_CAF1 57448 103 - 1
UUUUUGCAGCCUUCCUUCGGUUCCCUUCCACUGCCACUUUCUCUCUGCGGUCAUUUCCCCCUAUACUCGUACUUGUGUACC-----------CCCCC------AUACACAUGUGCAUGCA
....(((((((.......)))........(((((............))))).................((((.((((((..-----------.....------.)))))).)))).)))) ( -18.20)
>DroSim_CAF1 25557 103 - 1
UUUUUGCAGCCUUCCUUCGGUUCCCUUCCACUGCCACUUUCUCUCUGCGGUCAUUUCCCCCUAUACUCGUACUUGUGUACC-----------CCCCC------AUACACAUGUGCAUGCA
....(((((((.......)))........(((((............))))).................((((.((((((..-----------.....------.)))))).)))).)))) ( -18.20)
>DroYak_CAF1 45853 89 - 1
UUUUUGCAGCUUUCCUCCACUUCCCUCCCACUGGCACUUUCUCUCUGCGGUCAUUUCCCCAUAUU------CUUGUGUACC-------------CCC------AUGCACAUGUG------
.....((((.......(((............)))..........))))((........)).....------..((((((..-------------...------.))))))....------ (  -9.23)
>consensus
UUUUUGCAGCCUUCCUUCAGUUCCCUUCCACUGCCACUUUCUCUCUGCGGUCAUUUCCCCCUAUACUCGUACUUGUGUACC___________CCCCC______AUACACAUGUG___GCA
...((((((.......(((((........)))))..........))))))..................((((.((((((.........................)))))).))))..... ( -9.43 = -10.74 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:37 2006