Locus 8614

Sequence ID X_DroMel_CAF1
Location 21,405,682 – 21,405,786
Length 104
Max. P 0.706790
window14163

overview

Window 3

Location 21,405,682 – 21,405,786
Length 104
Sequences 3
Columns 107
Reading direction forward
Mean pairwise identity 95.02
Mean single sequence MFE -20.50
Consensus MFE -18.06
Energy contribution -17.95
Covariance contribution -0.11
Combinations/Pair 1.08
Mean z-score -2.07
Structure conservation index 0.88
SVM decision value 0.37
SVM RNA-class probability 0.706790
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21405682 104 + 22224390
AUUUGAGCAUGACGCACAUAAUUCAAACGCAUCAAAGCCAAUGCAUUGAGAAAA---AAGACAAUUUUUGCAAAUAUUGUCCUCGAGUUUGGAACUUGAGUUUUAAA
(((..((.(((.....)))..(((((((((((........)))).(((((....---..((((((..........)))))))))))))))))).))..)))...... ( -18.50)
>DroSec_CAF1 55958 107 + 1
AUUUGAGCAUGACGCACAUAAUUCAAACGCAUCAAAGCCAAUGCAUUGAGAAAAACAAAAACAAUUUUUGCAAAUAUUGUGCUCGAAUUUGAAACUUAAGUUUUAAA
(((((((((..(.........(((((..((((........)))).))))).....(((((.....)))))......)..)))))))))(((((((....))))))). ( -21.50)
>DroSim_CAF1 24062 107 + 1
AUUUGAGCAUGACGCACAUAAUUCAAACGCAUCAAAGCCAAUGCAUUGAGAAAAACAAAAACAAUUUUUGCAAAUAUUGUGCUCGAAUUUGAAACUUAAGUUUUAAA
(((((((((..(.........(((((..((((........)))).))))).....(((((.....)))))......)..)))))))))(((((((....))))))). ( -21.50)
>consensus
AUUUGAGCAUGACGCACAUAAUUCAAACGCAUCAAAGCCAAUGCAUUGAGAAAAACAAAAACAAUUUUUGCAAAUAUUGUGCUCGAAUUUGAAACUUAAGUUUUAAA
(((((((((..(.((.............)).((((.((....)).))))...........................)..)))))))))(((((((....))))))). (-18.06 = -17.95 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:36 2006