Locus 8613

Sequence ID X_DroMel_CAF1
Location 21,404,076 – 21,404,175
Length 99
Max. P 0.705056
window14162

overview

Window 2

Location 21,404,076 – 21,404,175
Length 99
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 79.17
Mean single sequence MFE -34.00
Consensus MFE -24.26
Energy contribution -24.27
Covariance contribution 0.00
Combinations/Pair 1.08
Mean z-score -1.59
Structure conservation index 0.71
SVM decision value 0.36
SVM RNA-class probability 0.705056
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21404076 99 + 22224390
CCCAACUAACUGGGCAUUCUGCGCACCUACUCGGUGGUCAGGUGUUCUAGAGGAUGGCGUUUUCUAGCUCGUCAUCCAAUUGCAGAUCUAUCUGGCACU---------------------
((((......))))...((((((((((((((....))).))))))......((((((((..........))))))))....))))).............--------------------- ( -32.10)
>DroSec_CAF1 54270 120 + 1
CCCAACUAACUGGGCAUUCUGGGCACCUACUCGAUAGUCAGGUGUCCUAGGGUGUGGCGUCUUCUAGCUCGUCAUCCUAUAUCAGAUCUAUCUUCCAGCCGCUCCUUGCACUGCGACUCC
((((......))))...((((((((((((((....))).))))))))(((((((((((........)).)).)))))))....))).......(((((..((.....)).))).)).... ( -35.20)
>DroSim_CAF1 21898 120 + 1
CCCAACUAACUGGGCAUUCUGGGCACCUACUCGAUCGUCAGGUGUCCUAGGGUGUGGCGUCUUCCAGCUCGUCAUCCUAUAUCAGAUCUAUCUUCCAGCCGCUCCUUGCACUGCGACUCC
((((......))))...(((((((((((((......)).))))))))(((((((((((........)).)).)))))))....))).......(((((..((.....)).))).)).... ( -34.70)
>consensus
CCCAACUAACUGGGCAUUCUGGGCACCUACUCGAUAGUCAGGUGUCCUAGGGUGUGGCGUCUUCUAGCUCGUCAUCCUAUAUCAGAUCUAUCUUCCAGCCGCUCCUUGCACUGCGACUCC
((((......))))...(((((((((((((......)).))))))....(((.((((((..........)))))))))...))))).................................. (-24.26 = -24.27 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:35 2006