| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,402,386 – 21,402,499 |
| Length | 113 |
| Max. P | 0.810495 |
| Location | 21,402,386 – 21,402,499 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.92 |
| Mean single sequence MFE | -25.60 |
| Consensus MFE | -23.29 |
| Energy contribution | -23.40 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.810495 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21402386 113 + 22224390 -------AAAAGUCUAGACAGUCCGAUUAGAAUAUUUCUGUUAUCGAGACAGCGACAUACUUAUCGGAUGAUAUCGGAAUUAUCGAUAUUAUCAACAUUUUAAUCGCGUUUUCCAAUUAC -------........((((.(((((((((((.....))))..)))).))).((((...........(((((((((((.....)))))))))))..........))))))))......... ( -26.10) >DroSec_CAF1 52673 119 + 1 AGCAACCAAAAGUCUAGACAGUCCGAGCAGAAUG-UUCUGUUAUCGAGACAGCGACAUACUUAUCGGAUAAUAUCGGAAUUAUCGAUAUAAUCAACAUUUUAAUCGCGUUUUACAAUUAC ...........((..((((.(((((((((((...-.)))))..))).))).((((...........(((.(((((((.....))))))).)))..........)))))))).))...... ( -26.10) >DroSim_CAF1 20290 119 + 1 AGCAACCAAAAGUCUAGACAGUCCGAGCAGAAUU-UUCUGUUAUCGAGACAGCGACAUACUUAUCGGAUAAUAUCGGAAUUAUCGAUAUAAUCAACAUUUUAAUCGCGUUUUCCAAUUAC ...............((((.(((((((((((...-.)))))..))).))).((((...........(((.(((((((.....))))))).)))..........))))))))......... ( -24.60) >consensus AGCAACCAAAAGUCUAGACAGUCCGAGCAGAAUA_UUCUGUUAUCGAGACAGCGACAUACUUAUCGGAUAAUAUCGGAAUUAUCGAUAUAAUCAACAUUUUAAUCGCGUUUUCCAAUUAC ...............((((.(((((((((((.....)))))..))).))).((((...........(((.(((((((.....))))))).)))..........))))))))......... (-23.29 = -23.40 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:33 2006