Locus 8610

Sequence ID X_DroMel_CAF1
Location 21,400,941 – 21,401,031
Length 90
Max. P 0.594516
window14159

overview

Window 9

Location 21,400,941 – 21,401,031
Length 90
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 86.47
Mean single sequence MFE -32.73
Consensus MFE -25.69
Energy contribution -26.33
Covariance contribution 0.64
Combinations/Pair 1.17
Mean z-score -2.10
Structure conservation index 0.78
SVM decision value 0.12
SVM RNA-class probability 0.594516
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21400941 90 - 22224390
GUGGCAAGCUCCGCGCUCGGUGCCGCCUGACAUCGCUUUAUGCAUAAGCAAACAUGUCAAGUCGAUGCCGGGAUCCUCCUGGCAGCCACU-----------
(((((..((.(((....))).))(((.((((((.((((.......))))....)))))).).)).(((((((.....)))))))))))).----------- ( -36.60)
>DroSec_CAF1 51210 90 - 1
GUGGCAAGCUCCGCGCUCGGUGCCGCCUGACAUCGCUUUAUGCAUAAGCAAACAUGUCAAGUCGAUGCCGGGAUCCUCCUGGCAGCCACU-----------
(((((..((.(((....))).))(((.((((((.((((.......))))....)))))).).)).(((((((.....)))))))))))).----------- ( -36.60)
>DroSim_CAF1 18844 90 - 1
GUGGCAAGCUCCGCGCUCGGUGCCGCCUGACAUCGCUUUAUGCAUAAGCAAACAUGUCAAGUCGAUGCCGGGAUCCUCCUGGCAGCCACU-----------
(((((..((.(((....))).))(((.((((((.((((.......))))....)))))).).)).(((((((.....)))))))))))).----------- ( -36.60)
>DroEre_CAF1 35435 88 - 1
GUGGCAAGCCCCACGCUCGGCGCCGCC-GACAUCGUUUUAUGCAUAAGCAAACAUGUCAAGUCGAUGCCGGGAUCCC-CCGGCAGCCACU-----------
(((((........((((.(((...)))-(((((.(((...(((....))))))))))).)).)).(((((((....)-))))))))))).----------- ( -36.20)
>DroYak_CAF1 39820 100 - 1
GUGGCAAGCUCCACGCUCGGUGCCGCCUGACAUCGUUUUAUGCAUAAGCAAACAAGUCAAGUCGAUGCCGGGAUCCC-CCGACAGCCACUUCCACUUCCAC
(((((.(((.....))).(((..(((.((((...(((...(((....))))))..)))).).))..)))(((....)-))....)))))............ ( -27.90)
>DroAna_CAF1 43589 90 - 1
GUGGCAACCUCCACGCUCGUCGCCGCCUGUCAUCGUUUUAUGCAAAAGCAAACAUGUCAAGUCGAUGCGGGGAGUUCCCUUCUAGCUUCU-----------
((((......))))((((((((..((.((.(((.(((...(((....))))))))).)).))))))).((((....))))...)))....----------- ( -22.50)
>consensus
GUGGCAAGCUCCACGCUCGGUGCCGCCUGACAUCGCUUUAUGCAUAAGCAAACAUGUCAAGUCGAUGCCGGGAUCCCCCUGGCAGCCACU___________
(((((..((.((......)).))(((.((((((.((((.......))))....)))))).).)).(((((((.....))))))))))))............ (-25.69 = -26.33 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:32 2006