Locus 861

Sequence ID X_DroMel_CAF1
Location 2,442,747 – 2,442,857
Length 110
Max. P 0.569088
window1388

overview

Window 8

Location 2,442,747 – 2,442,857
Length 110
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 84.44
Mean single sequence MFE -20.55
Consensus MFE -13.63
Energy contribution -13.97
Covariance contribution 0.34
Combinations/Pair 1.09
Mean z-score -2.02
Structure conservation index 0.66
SVM decision value 0.07
SVM RNA-class probability 0.569088
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2442747 110 - 22224390
GUAUUCUAUAAAUGCUUCUUCUCUUUUCCGAGAUCUUAUUU----------CAUCCCAAUUCCCAUUAACUGAGCUGCCAAAGCUGCCUGUUCAGUCCAAUAGCAGUUCAGUACCAUAAA
(((((.....)))))....((((......))))........----------.................((((((((((....((((......))))......))))))))))........ ( -22.10)
>DroSec_CAF1 3642 120 - 1
GCAUUCUAUAAAUGCUUAUUUUCUUUUCAGAGAGCUUAUUUAAAACAUAAACAUCCCAAUUCCCAUUAACUGAGCUGCCAGAGCUGUUUGAGCUGUCCACUAGCAGUUCAAUACCAUUAA
(((((.....)))))...((((((....))))))....................................((((((((.((((((.....)))).....)).)))))))).......... ( -19.90)
>DroSim_CAF1 5795 120 - 1
GCAUUCUAAAAAUGCUUCUUCUCUUUACAGAAAGCUUAUUUAAAACAUAAACAUCCCAAUUCCCAUUAACUGAGCUGCCAGAGCUGCCUGAACUGUCCACUAGCAGUUCAAUACCAUCAA
(((((((...........((((......))))((((((.((((......................)))).))))))...)))).))).((((((((......)))))))).......... ( -19.65)
>consensus
GCAUUCUAUAAAUGCUUCUUCUCUUUUCAGAGAGCUUAUUUAAAACAUAAACAUCCCAAUUCCCAUUAACUGAGCUGCCAGAGCUGCCUGAACUGUCCACUAGCAGUUCAAUACCAUAAA
(((((.....)))))....((((......)))).....................................((((((((.((.((.(......).))...)).)))))))).......... (-13.63 = -13.97 +   0.34) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:31 2006