| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,386,569 – 21,386,669 |
| Length | 100 |
| Max. P | 0.863049 |
| Location | 21,386,569 – 21,386,669 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 87.44 |
| Mean single sequence MFE | -31.42 |
| Consensus MFE | -21.80 |
| Energy contribution | -22.08 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.863049 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21386569 100 + 22224390 -------GCAGGCCAGGCCAUAUCCUUUGACAAUGCCAAUUGGGGG-CAACC---------CUGGCGUUGUCCUUUUUACAAUUUGAUUGCUUGUUUACGAGCUGCUUUUCGGUUUU -------..(((((((((..........((((((((((....(((.-...))---------))))))))))).................(((((....))))).))))...))))). ( -32.90) >DroSec_CAF1 34854 101 + 1 -------GCAGGCCAGGCCAUAUCCUUUGACAAUGCCAAUUGGGGGCCAACC---------CUGGCGUUGUCCUUUUUACAAUUUGAUUGCUUGUUUACGAGCUGCUUUUCGGUUUU -------..(((((((((..........((((((((((...(((......))---------))))))))))).................(((((....))))).))))...))))). ( -31.00) >DroEre_CAF1 22786 99 + 1 --------UACGCCAGGCCAUAUCCUUUGACAAUGCCAAUUGGGGG-CAACC---------CUGGCGUUGUCCUUUUUACAAUUUUAUUGCUUGUUUACGAGCUGCUUUUCGGGUUU --------..((..((((..........((((((((((....(((.-...))---------))))))))))).................(((((....))))).))))..))..... ( -32.10) >DroYak_CAF1 23493 99 + 1 --------AACGGCAGGCCAUAUCCUUUGACAAUGCCAAUUGGGGG-CAACC---------CUGGCGUUGUCCUUUUUACAAUUUUAUUGCUUGUUUACGAGCUGCUUUUCGGUUUU --------..(((.((((..........((((((((((....(((.-...))---------))))))))))).................(((((....))))).)))).)))..... ( -33.80) >DroAna_CAF1 31020 116 + 1 UGUGUUUAUAUCCUUGGCCAUAUCCUUUGACAAUGCCAAUUGGUGG-CAACGGCAACGGCAGCGGCGUUGUCCUUUUUACAAUUUUAUUGCUUGUUUACGAGCUGCUUUUCGGUUUU ...............((((.........(((((((((..(((.((.-...)).))).(....)))))))))).................(((((....)))))........)))).. ( -27.30) >consensus ________CACGCCAGGCCAUAUCCUUUGACAAUGCCAAUUGGGGG_CAACC_________CUGGCGUUGUCCUUUUUACAAUUUUAUUGCUUGUUUACGAGCUGCUUUUCGGUUUU ..............(((((.........((((((((((.....((.....))..........)))))))))).................(((((....)))))........))))). (-21.80 = -22.08 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:21 2006