| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,385,015 – 21,385,124 |
| Length | 109 |
| Max. P | 0.875237 |
| Location | 21,385,015 – 21,385,124 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 75.44 |
| Mean single sequence MFE | -43.13 |
| Consensus MFE | -20.39 |
| Energy contribution | -21.17 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.05 |
| Mean z-score | -3.02 |
| Structure conservation index | 0.47 |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.875237 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21385015 109 + 22224390 CCGGCGUUCG--------AGUUCUCAGUCCAUGUGACUCAGUGAGUGAGUGGAGUGACAGUGGCGGGUAAUAUGAUUUGGUCGCCACUCAUUUAUGGACGACAGGACUCCGAUUCUG .(((.(((.(--------((((((..((((((...(((((.....))))).((((((..(((((((.(((......))).)))))))))))))))))))...))))))).))).))) ( -42.90) >DroSec_CAF1 30707 100 + 1 CCGGCGUUCG--------AGUUCUCGGUACAUGUGACUCAGUGAG---------UGACAGUGGCGGGUAAUUUGAUUUGGUCGCCACUCAUUUAUGGACGACAGGACUCCAAUGCUG .(((((((.(--------((((((((...(((((.((((...)))---------).))((((((((.(((......))).)))))))).....)))..)))..)))))).))))))) ( -39.90) >DroYak_CAF1 21732 116 + 1 CCGGCGUACGGAGUACUAUGUACUCUGUACUCUGUACUCGCUACAUGACUG-AGUGACAGUGGCGGGUAAUUUGAUUUGGUCGCCACUCAUUUAUGGACCGCAGGAGUCGGACUCUU ((((((((((((((((...)))))))))))(((((..(((((.((....))-))))).((((((((.(((......))).))))))))............))))).)))))...... ( -46.60) >consensus CCGGCGUUCG________AGUUCUCAGUACAUGUGACUCAGUGAGUGA_UG_AGUGACAGUGGCGGGUAAUUUGAUUUGGUCGCCACUCAUUUAUGGACGACAGGACUCCGAUUCUG ((..(((((.................(((.....))).....................((((((((.(((......))).)))))))).......)))))...))............ (-20.39 = -21.17 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:20 2006