Locus 8603

Sequence ID X_DroMel_CAF1
Location 21,372,344 – 21,372,443
Length 99
Max. P 0.977301
window14143

overview

Window 3

Location 21,372,344 – 21,372,443
Length 99
Sequences 3
Columns 99
Reading direction forward
Mean pairwise identity 73.01
Mean single sequence MFE -42.50
Consensus MFE -28.01
Energy contribution -28.90
Covariance contribution 0.89
Combinations/Pair 1.08
Mean z-score -1.77
Structure conservation index 0.66
SVM decision value 1.79
SVM RNA-class probability 0.977301
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21372344 99 + 22224390
GACAGCGGUGCCUGGACUCCGGACUGCGGACUCCGGACUGCGGACUCCGGACUGCGGACUCCGGGCUGAGGACUCCGGCUCGAGUCCGUAGUAAAGCUG
..((((.....(((((.((((.(.(.(((...))).).).)))).)))))(((((((((((.((((((.......)))))))))))))))))...)))) ( -50.60)
>DroSec_CAF1 17176 85 + 1
GACAGCGGGACCUGGACUACGGAGAGCGGAC--------------AGCGGACUGCGGACUCCGGGCUGAGGACUCCGGCUCGAGUCCGUAGUAAAGGUG
.........((((..(((((.....((((..--------------......))))((((((.((((((.......)))))))))))))))))..)))). ( -36.10)
>DroEre_CAF1 9350 85 + 1
GACAGCGGACAGCGGACGGCGGACG--------------GCGGACUCCGGACUGCGGACUCCGGGUUUCGGGCUCCGGCUGGAGUCCGUAGUAAAGCUG
....((.....))...((((..((.--------------(((((((((((....((((..(((.....)))..)))).))))))))))).))...)))) ( -40.80)
>consensus
GACAGCGGAACCUGGACUACGGACAGCGGAC________GCGGACUCCGGACUGCGGACUCCGGGCUGAGGACUCCGGCUCGAGUCCGUAGUAAAGCUG
..((((.....(((.....)))............................(((((((((((.((((((.......)))))))))))))))))...)))) (-28.01 = -28.90 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:14 2006