Locus 8600

Sequence ID X_DroMel_CAF1
Location 21,368,090 – 21,368,186
Length 96
Max. P 0.998151
window14140

overview

Window 0

Location 21,368,090 – 21,368,186
Length 96
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 72.21
Mean single sequence MFE -22.42
Consensus MFE -18.63
Energy contribution -18.16
Covariance contribution -0.47
Combinations/Pair 1.22
Mean z-score -2.15
Structure conservation index 0.83
SVM decision value 3.02
SVM RNA-class probability 0.998151
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21368090 96 - 22224390
CCCACCAAAAACUCCGACGUA------UACGAGUAUGUAUGCAUGCGUU-GGAGAAAGCGGAGUUAUCUGCC-------------CUUUUCCCUUUAGCUUUCCCUUUCCCUUACU
...........((((((((((------(.((........)).)))))))-))))...(((((....))))).-------------............................... ( -21.60)
>DroSec_CAF1 12200 79 - 1
CCCACCAAAUACUCCGACGUA------UACGAGCAUGUAUGCAUGCGCU-GGAGAAAGCGGAGUCAUCUGCC-------------CUUUUCCCUU-----------------UACU
...........(((((.((..------..)).(((((....)))))..)-))))...(((((....))))).-------------..........-----------------.... ( -19.90)
>DroSim_CAF1 12361 79 - 1
CCCACCAAAUACUCCGACGUG------UACGAGCAUGUAUGCAUGCGCU-GGAGAAAGCGGAGUUAUCUGCC-------------CUUUUCCCUC-----------------UACU
....................(------((.(((((((....)))))...-((((((.(((((....))))).-------------.)))))).))-----------------))). ( -20.00)
>DroEre_CAF1 4048 88 - 1
CCCACCAAAAACUCCGACGC--------GUAUGUAUGCAUGCAUGCGCU-GGAGAAAGCGGAGUUAUCUGCC-------------CCUUUCCCUUU-----UCCUUUUCCC-UUUC
...........(((((..((--------(((((((....))))))))))-))))...(((((....))))).-------------...........-----..........-.... ( -24.00)
>DroYak_CAF1 3711 110 - 1
CCCACCAAAGACUCCAACGUACAUACAUAUAUGUAUGUAUGCAUGCGCCGGGAGAAAGCGGAGUUAUCUGCCAUUUCCCUUUUCCCAUUUCCCUUU-----UCCUUUCCCC-AUCC
......((((.......((((((((((....))))))))))........((((((..(((((....)))))..)))))).............))))-----..........-.... ( -26.60)
>consensus
CCCACCAAAAACUCCGACGUA______UACGAGUAUGUAUGCAUGCGCU_GGAGAAAGCGGAGUUAUCUGCC_____________CUUUUCCCUUU_____UCC_UU_CCC_UACU
...........((((..((((......)))).(((((....)))))....))))...(((((....)))))............................................. (-18.63 = -18.16 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:11 2006