Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,442,467 – 2,442,587 |
Length | 120 |
Max. P | 0.662849 |
Location | 2,442,467 – 2,442,587 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -48.53 |
Consensus MFE | -48.03 |
Energy contribution | -48.37 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.54 |
Structure conservation index | 0.99 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.662849 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2442467 120 + 22224390 CCCGGCGUAGUGCAUCCGCCACAGCAACCACUGCCCACGGCGCCCAGCGGCCCAAACUCGCUGCAGCCGAACUCGGUGGGCCAGCCGGGGGCCACCACCUCCUCGAACAGCAGCGCCUCC ...(((((..(((....((....)).......((((.((((((((.(((((........))))).((((....))))))))..)))).)))).................))))))))... ( -49.40) >DroSec_CAF1 3363 120 + 1 CCCGGCGUAGUGCAUCCGCCACAGCAACCCCUGCCCACGGCGCCCAGCGGCCCAAACUCGCUGCAGCCGAACUCGGUGGGCCAGCCAGGGGCCACCACCUCAUCGAACAGCAGCGCCUCC ...(((((..(((....((....)).......((((..(((((((.(((((........))))).((((....))))))))..)))..)))).................))))))))... ( -46.80) >DroSim_CAF1 5516 120 + 1 CCCGGCGUAGUGCAUCCGCCACAGCAACCCCUGCCCACGGCGCCCAGCGGCCCAAACUCGCUGCAGCCGAACUCGGUGGGCCAGCCGGGGGCCACCACCUCAUCGAACAGCAGCGCCUCC ...(((((..(((....((....)).......((((.((((((((.(((((........))))).((((....))))))))..)))).)))).................))))))))... ( -49.40) >consensus CCCGGCGUAGUGCAUCCGCCACAGCAACCCCUGCCCACGGCGCCCAGCGGCCCAAACUCGCUGCAGCCGAACUCGGUGGGCCAGCCGGGGGCCACCACCUCAUCGAACAGCAGCGCCUCC ...(((((..(((....((....)).......((((.((((((((.(((((........))))).((((....))))))))..)))).)))).................))))))))... (-48.03 = -48.37 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:30 2006