Locus 8599

Sequence ID X_DroMel_CAF1
Location 21,328,944 – 21,329,064
Length 120
Max. P 0.582656
window14139

overview

Window 9

Location 21,328,944 – 21,329,064
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.83
Mean single sequence MFE -44.75
Consensus MFE -27.41
Energy contribution -27.58
Covariance contribution 0.17
Combinations/Pair 1.14
Mean z-score -2.22
Structure conservation index 0.61
SVM decision value 0.10
SVM RNA-class probability 0.582656
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21328944 120 - 22224390
UUUCCGCGACUAUCGCACAGGGUUGGCACCCAUCUUUACUCCGAAGAGUAUGAGCGCUUUAUGCGCAAGUCCAUGGACUACGUUCUUUCCCAGCGCGCGGAAAGUGGGGAAAAUCGACAC
((((((((.....(((...(((..((.((...((..(((((....))))).))((((.....)))).((((....))))..)).))..))).)))))))))))((.((.....)).)).. ( -39.00)
>DroPse_CAF1 448 120 - 1
UUCCCGCGUUUAUCGCGAAUGGUUCGUACACAUCUAUACUCCGAUGAGUACGAGCGCUUCAUGCGCCAGUCAAUGGACUUUGUACUGGCCCAACGCGAGAAGAGUGGGGAAAAACGUCAC
(((((((.....(((((....((((((((.((((........)))).))))))))((.....))(((((((((......))).))))))....))))).....))))))).......... ( -49.40)
>DroSec_CAF1 9769 120 - 1
UUUCCGCGACUAGCGCACAGGGUUCGCACACAUCUUUACUCCGAAGAGUAUGAGCGGUUUAUGCGCAAGUCCAUGGACUACGUUCUUUCCCAGCGCGCGUAAAGUGGGGAGAAUCGCCAC
...((((.....(((.((...)).))).....((..(((((....))))).))))))(((((((((.((((....))))..(((.......))))))))))))((((.(.....).)))) ( -37.40)
>DroEre_CAF1 1963 120 - 1
UUUCCGCGCCUGGCGCACCGGGUGCGCACCCAUCUGUACUCCGAGGAGUACGAGCGGUUCAUGCGCAAGUCCAUGGACUAUGUGCUGACCCAACGCGCCACAAGUGGCGAGAAGCGCCAC
.....((((((((....))))))))((.......(((((((....))))))).((((.(((.(((((((((....)))).)))))))).))..(.(((((....))))).)..))))... ( -55.00)
>DroYak_CAF1 721 120 - 1
UUUCCGCGACUAUCGCACCGGGUUCGCACCCAUCUUUAUUCCGAAGAAUACGAGCGGUUCAUGCGCAAGUCCAUGGACUACGUUCUUUCCCAACGCGCUGAAAGUGGCGAGAAGCGCCAC
...((((............((((....)))).(((((.....)))))......))))((((.((((.((((....))))..(((.......))))))))))).((((((.....)))))) ( -38.30)
>DroPer_CAF1 448 120 - 1
UUCCCGCGUUUAUCGCGAAUGGUUCGUACACAUCUAUACUCCGAUGAGUACGAGCGCUUCAUGCGCCAGUCAAUGGACUUUGUACUGGCCCAACGCGAGAAGAGUGGGGAAAAACGUCAC
(((((((.....(((((....((((((((.((((........)))).))))))))((.....))(((((((((......))).))))))....))))).....))))))).......... ( -49.40)
>consensus
UUUCCGCGACUAUCGCACAGGGUUCGCACACAUCUUUACUCCGAAGAGUACGAGCGCUUCAUGCGCAAGUCCAUGGACUACGUUCUGUCCCAACGCGCGAAAAGUGGGGAAAAACGCCAC
(((((((.....((((...(((...((.........(((((....)))))...(((.....))))).((((....)))).........)))...)))).....))))))).......... (-27.41 = -27.58 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:10 2006