Locus 8598

Sequence ID X_DroMel_CAF1
Location 21,326,951 – 21,327,064
Length 113
Max. P 0.886866
window14138

overview

Window 8

Location 21,326,951 – 21,327,064
Length 113
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 88.07
Mean single sequence MFE -20.33
Consensus MFE -18.90
Energy contribution -18.90
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.84
Structure conservation index 0.93
SVM decision value 0.94
SVM RNA-class probability 0.886866
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21326951 113 - 22224390
CAGCAGUAAAUAUUUAUGCUUGUGUUUUAUUUAUUUACAUUGUCAAAACCAAUUUCGCCCAAGGGUUCAAUUGUUUUUCACUUUUAUGCUCC-------GCUCAGGAACCUCUCAAACGG
..((((((((((..((.((....))..))..)))))))...((.((((.(((((..(((....)))..))))).)))).)).....)))(((-------.....)))............. ( -20.70)
>DroPse_CAF1 121440 116 - 1
CAGCAGUAAAUAUUUAUGCUUGUGUUUUAUUUAUUUACAUUGUCAAAACCAAUUUUGCCCAAGGGUUCAAUUGUUUUUCACUUUUAUGCUCCCUUUCCCGCUCC---ACUUUCCAGAUU-
.(((((((((((..((.((....))..))..)))))))...((.((((.(((((..(((....)))..))))).)))).)).....))))..............---............- ( -19.50)
>DroYak_CAF1 69293 109 - 1
CAGCAGUAAAUAUUUAUGCUUGUGUUUUAUUUAUUUACAUUGUCAAAACCAAUUUCGCCCAAGGGUUCAAUUGUUUUUCACUUUUAUGCUCC-------GCUCCGGAACCUCUCAA----
..((((((((((..((.((....))..))..)))))))...((.((((.(((((..(((....)))..))))).)))).)).....)))(((-------(...)))).........---- ( -20.80)
>consensus
CAGCAGUAAAUAUUUAUGCUUGUGUUUUAUUUAUUUACAUUGUCAAAACCAAUUUCGCCCAAGGGUUCAAUUGUUUUUCACUUUUAUGCUCC_______GCUCCGGAACCUCUCAAA___
.(((((((((((..((.((....))..))..)))))))...((.((((.(((((..(((....)))..))))).)))).)).....)))).............................. (-18.90 = -18.90 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:09 2006