Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,321,950 – 21,322,058 |
Length | 108 |
Max. P | 0.588227 |
Location | 21,321,950 – 21,322,058 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.11 |
Mean single sequence MFE | -40.13 |
Consensus MFE | -27.76 |
Energy contribution | -30.10 |
Covariance contribution | 2.34 |
Combinations/Pair | 1.06 |
Mean z-score | -2.13 |
Structure conservation index | 0.69 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.588227 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21321950 108 - 22224390 UGGAAAGUGGCAGUGUCAA------------UGGCAGCGGCAGCAAAUCGGGAGGCAAAAAGGACAGGACAGCCGGAAAAACCGAGAAACAGGGCCGGCUGCUGCCACAACUUUUUCUAU (((((((((((((((((..------------..((.((....))....(....)))......))))...(((((((.....((........)).)))))))))))))).....)))))). ( -37.70) >DroEre_CAF1 60653 120 - 1 UGGAAAGUGGCAGUGGCAGUGGCAGUGGCAGUGGCAGUGCCAGCAAAUCUGGACGCAAACAGGACGGGACAGCCGGAAAAAACUAGAAACAGGGCCGGCUGCUGCCAGAACUUUUUCUAU ((((((((((((.((.((.((.(...).)).)).)).))))).....(((((.(((......).))((.(((((((......((......))..))))))))).)))))...))))))). ( -41.50) >DroYak_CAF1 64347 120 - 1 UGGAAAGUGGCAGUGGCAGUCGCAGUGGCAGUGGCAGUGGCAGCAAAUCUGGACGCAAACAGGACAGGACAGUCGGAAAAACCCAGAAACAGGGCCGGCUGCUGCCAGAACUUUUUCUAU (((((((((.((.((.((.......)).)).)).)).(((((((...((((..(.......)..))))..((((((.....(((.......)))))))))))))))).....))))))). ( -41.20) >consensus UGGAAAGUGGCAGUGGCAGU_GCAGUGGCAGUGGCAGUGGCAGCAAAUCUGGACGCAAACAGGACAGGACAGCCGGAAAAACCCAGAAACAGGGCCGGCUGCUGCCAGAACUUUUUCUAU (((((((((.((.((.((.......)).)).)).))..((((((...((((..(.......)..))))..((((((.....((........)).))))))))))))......))))))). (-27.76 = -30.10 + 2.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:03 2006