Locus 8594

Sequence ID X_DroMel_CAF1
Location 21,318,585 – 21,318,675
Length 90
Max. P 0.592228
window14131

overview

Window 1

Location 21,318,585 – 21,318,675
Length 90
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 74.82
Mean single sequence MFE -27.12
Consensus MFE -14.60
Energy contribution -14.63
Covariance contribution 0.03
Combinations/Pair 1.23
Mean z-score -1.59
Structure conservation index 0.54
SVM decision value 0.12
SVM RNA-class probability 0.592228
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21318585 90 - 22224390
GCGGAUGAU---------GAUUAUGAUGAUGGAAAGUGCUGGAAGAGAGGCGAA-------------------ACUUUUCCCCCACUGCACUCAUAAUUCCGUUAGCUAAUUUGCAUC
...((((..---------(((((...((((((((((((((((..((((((....-------------------.))))))..)))..))))).....))))))))..)))))..)))) ( -26.00)
>DroPse_CAF1 109163 104 - 1
-----UGGU---------GAUGAUGAUGAUGGAAAGUGUAGGAAAAGAUUCAAAACGUGCAGGAUAAGGACGAACUUUGCUCAAGCUGCACUCAUAAUUCCUUUAGCUAAUUUGCAUC
-----.(((---------(..(((..(((.((((.((....(((....)))...))(((((((((((((.....))))).))...))))))......)))).)))....)))..)))) ( -18.50)
>DroSec_CAF1 65368 90 - 1
GCGUAUGAC---------GAUUAUGAUGAUGGAAAGUGCUGGAAGAGAGGCGAA-------------------ACUUUUCCCCCACUGCACUCAUAAUUCCGUUAGCUAAUUUGCAUC
....(((..---------(((((...((((((((((((((((..((((((....-------------------.))))))..)))..))))).....))))))))..)))))..))). ( -23.40)
>DroEre_CAF1 57499 89 - 1
GCGGAUGAU---------GAUUAUGAUGAUGGAAAGUGCGGGGGGGGAGGCGAA-------------------ACUU-UCCCCCGCUGCACUCAUAAUUCCGUUAGCUAAUUUGCAUC
...((((..---------(((((...((((((((((((((((((((((((....-------------------.)))-)))))).))))))).....))))))))..)))))..)))) ( -39.60)
>DroYak_CAF1 61120 99 - 1
GCGGAUGAUGAUUCGGAUGAUUAUGAUGAUGGAAAGUGCAGGAAGGGAGGCGAA-------------------ACUUCUCCUCCACUGCACUCAUAAUUCCGUUAGCUAAUUUGCAUC
((((((.......((((..(((((((...(....)((((((....(((((.((.-------------------...)).))))).))))))))))))))))).......))))))... ( -34.74)
>DroPer_CAF1 85782 104 - 1
-----UGGU---------GAUGAUGAUGAUGGAAAGUGUUGGAAAAGAUUCAAAACGUGCAGGAUAAGGACGAACUUUGCUCAAGCUGCACUCAUAAUUCCUUUAGCUAAUUUGCAUC
-----.(((---------(..(((..(((.((((.((.(((((.....))))).))(((((((((((((.....))))).))...))))))......)))).)))....)))..)))) ( -20.50)
>consensus
GCGGAUGAU_________GAUUAUGAUGAUGGAAAGUGCUGGAAGAGAGGCGAA___________________ACUUUUCCCCCACUGCACUCAUAAUUCCGUUAGCUAAUUUGCAUC
..........................(((((((((((((.(((((((...........................)))))))......))))).....))))))))((......))... (-14.60 = -14.63 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:02 2006