Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,318,297 – 21,318,447 |
Length | 150 |
Max. P | 0.848547 |
Location | 21,318,297 – 21,318,416 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.83 |
Mean single sequence MFE | -44.17 |
Consensus MFE | -36.20 |
Energy contribution | -36.20 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.22 |
Mean z-score | -1.69 |
Structure conservation index | 0.82 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.750750 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21318297 119 - 22224390 CACUCGUCAUGUUGCUGGCGCCGCAGCAGCAUGUCGCCGGCAGCAGCAACAAUGUUGCCGGCCGUGUGAA-AAGCCUCGUCCAAUUGGCUCACUGGGGCUUUCCCGACUUCCCGACUUCC (((.((.((((((((((......)))))))))).)((((((((((.......)))))))))).).))).(-(((((((((((....))...)).)))))))).................. ( -50.00) >DroSec_CAF1 65086 119 - 1 CACUCGGCAUGUUGCUGGCGCCGCAGCAACAUGUCCCCGACAGCAGCAACAAUGUUGCCGGCCGUGUGGA-AAGCCUCGUCCAAUUGGCUCACUGGGGCUUUCCCGACUUCCCGACUUCC .....((((((((((((......)))))))))))).......((((((....))))))(((...((.(((-(((((((((((....))...)).)))))))))))).....)))...... ( -47.20) >DroEre_CAF1 57211 112 - 1 CACUCGGCAUGUUGCUGGCCUCGCAGCAGCAUGUGCCCGGCGUCAGCAACAAUGUUGCCGGCCGUGUGGAAAAGCCUCGUCCAAUUGGCUCACUGGGACUUU--------CACGACUUCC ...((((((((((((((......))))))))))).(((((((.(((((....))))).))((((..((((.........))))..))))...))))).....--------..)))..... ( -41.30) >DroYak_CAF1 60867 111 - 1 CUUGUUGCAUGUUGCUGGCGCCGUAGCAGCAUGUUCCCAGUGGCGGCAACAAUGUUGCUGGCCGUGCGAAAAAGCCUCGUCCAAUUGGCUCACUUGGGCUU---------CCCGACUUCC ...((((((((((((((......))))))))))..(((((((((((((((...))))))((.((.((......))..)).)).....)).))).))))...---------..)))).... ( -38.20) >consensus CACUCGGCAUGUUGCUGGCGCCGCAGCAGCAUGUCCCCGGCAGCAGCAACAAUGUUGCCGGCCGUGUGAA_AAGCCUCGUCCAAUUGGCUCACUGGGGCUUU________CCCGACUUCC (((.(((((((((((((......))))))))))...(((((((((.......)))))))))))).)))...(((((((((((....))...)).)))))))................... (-36.20 = -36.20 + -0.00)
Location | 21,318,337 – 21,318,447 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 78.77 |
Mean single sequence MFE | -44.41 |
Consensus MFE | -34.56 |
Energy contribution | -34.88 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.29 |
Mean z-score | -1.74 |
Structure conservation index | 0.78 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.848547 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21318337 110 - 22224390 U--UGCGUGUUGCGCGCUGCAAGUUGCAUGUUGCACUCGUCAUGUUGCUGGCGCCGCAGCAGCAUGUCGCCGGCAGCAGCAACAAUGUUGCCGGCCGUGUGAA-AAGCCUCGU (--((((((.....))).))))(..((...(..(((..(.((((((((((......)))))))))).)((((((((((.......)))))))))).)))..).-..))..).. ( -50.60) >DroSec_CAF1 65126 110 - 1 U--GGCGUGUUGCGCGCUGCAAGUUGCAUGUUGCACUCGGCAUGUUGCUGGCGCCGCAGCAACAUGUCCCCGACAGCAGCAACAAUGUUGCCGGCCGUGUGGA-AAGCCUCGU .--(((...(..((((((((((((((..((((((..((((((((((((((......))))))))))...))))..)))))).)))).))).))).))))..).-..))).... ( -49.00) >DroEre_CAF1 57243 104 - 1 C--UGCGUGUUUCGUGUUGCAU-------GUUGCACUCGGCAUGUUGCUGGCCUCGCAGCAGCAUGUGCCCGGCGUCAGCAACAAUGUUGCCGGCCGUGUGGAAAAGCCUCGU .--.((((((........))))-------))..(((.(((((((((((((......))))))))))...((((((.((.......)).))))))))).)))............ ( -38.30) >DroYak_CAF1 60898 106 - 1 CGUUAAAUGUUGCAUGCUGCAU-------GCUGCUUGUUGCAUGUUGCUGGCGCCGUAGCAGCAUGUUCCCAGUGGCGGCAACAAUGUUGCUGGCCGUGCGAAAAAGCCUCGU ((.......(((((((..((..-------((..((.(..(((((((((((......)))))))))))..).))..))((((((...)))))).)))))))))........)). ( -39.76) >consensus C__UGCGUGUUGCGCGCUGCAA_______GUUGCACUCGGCAUGUUGCUGGCGCCGCAGCAGCAUGUCCCCGGCAGCAGCAACAAUGUUGCCGGCCGUGUGAA_AAGCCUCGU ....((...(((((((..((((........))))....((((((((((((......)))))))))))).(((((((((.......))))))))).)))))))....))..... (-34.56 = -34.88 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:01 2006