Locus 8592

Sequence ID X_DroMel_CAF1
Location 21,310,461 – 21,310,559
Length 98
Max. P 0.704739
window14128

overview

Window 8

Location 21,310,461 – 21,310,559
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 96.21
Mean single sequence MFE -22.62
Consensus MFE -18.90
Energy contribution -18.90
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.55
Structure conservation index 0.84
SVM decision value 0.36
SVM RNA-class probability 0.704739
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21310461 98 + 22224390
AACAACAAUGAAGUGCAGCCUGCUUAGAAUAGCAAUUAAGGCGAUGAGAGUCGUCGACUCGGAGCCAAAAAGGAAAGGAAAGCCAAGUUUGGGGACAA
............((.(..((((((......)))).....((((((....)))))).....))..(((((..((.........))...)))))).)).. ( -21.90)
>DroSec_CAF1 57429 93 + 1
AACAACAAUGAAGUGCAGCCUGCUUAGAAUAGCAAUUAAGGCGAUGAGAGUCGUCGACUCGGAGCCAAAAAG-----GAAAGCCAAGUUUGGGGACAA
............((.(..((((((......)))).....((((((....)))))).....))..(((((..(-----(....))...)))))).)).. ( -22.70)
>DroSim_CAF1 48285 93 + 1
AACAACAAUGAAGUGCAGCCUGCUUAGAAUAGCAAUUAAGGCGAUGAGAGUCGUCGACUCGGAGCCAAAAAG-----GAAAGCCAAGUUUGGGGACAA
............((.(..((((((......)))).....((((((....)))))).....))..(((((..(-----(....))...)))))).)).. ( -22.70)
>DroEre_CAF1 50603 92 + 1
AACAACAAUGGAGUGCAGCCUGCUUAGAAUAGCAAUUAAGGCGAUGAGAGUCGUCGACUCGCAGCCAA-AAG-----GAAAGCCAAGUUUGGGGACAA
...(((..(((..(((....((((......)))).....((((((....)))))).....))).))).-..(-----(....))..)))((....)). ( -24.10)
>DroYak_CAF1 53678 93 + 1
AACAACAAUGAAGUGCAGCCUGCUUAGAAUAGCAAUUAAGGCGAUGAGAGUCGUCGACUCGGAGCCAAAAAG-----GAAAGCCAAGUUUGGAGACAA
....................((((......)))).....((((((....))))))((((.((..((.....)-----)....)).))))((....)). ( -21.70)
>consensus
AACAACAAUGAAGUGCAGCCUGCUUAGAAUAGCAAUUAAGGCGAUGAGAGUCGUCGACUCGGAGCCAAAAAG_____GAAAGCCAAGUUUGGGGACAA
............(.((....((((......)))).....(((.....(((((...)))))...)))...............)))....(((....))) (-18.90 = -18.90 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:59 2006