Locus 8589

Sequence ID X_DroMel_CAF1
Location 21,305,585 – 21,305,684
Length 99
Max. P 0.591470
window14122

overview

Window 2

Location 21,305,585 – 21,305,684
Length 99
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 72.65
Mean single sequence MFE -25.30
Consensus MFE -14.49
Energy contribution -15.43
Covariance contribution 0.95
Combinations/Pair 1.26
Mean z-score -1.39
Structure conservation index 0.57
SVM decision value 0.12
SVM RNA-class probability 0.591470
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21305585 99 - 22224390
GCGAAAAUUACUUUAUAACAGCCA----AG-----UUGGCUGACUGAA-ACGCAGCGGCUGGGA-GUGGGAAAAUCCCUAAGGGAAUGGAAAGGCUGCAAAACAACUGAA----------
..................(((((.----..-----(..((((.(((..-...)))))))..)..-..(((.....)))..............))))).............---------- ( -23.80)
>DroSec_CAF1 47097 96 - 1
GCGAAAAUUACUUUAUAACAGCCA----AG-----UUGGCUGACUGAA-ACGCAGCGGCUGAGA-GCUGCAAAAUCCCUGGGGGAAUGG---GGCUGCAAAACAACUGAA----------
(((...............(((((.----..-----..)))))......-..((.(((((.....-)))))....((((...))))....---.)))))............---------- ( -25.20)
>DroSim_CAF1 43526 96 - 1
GCGAAAAUUACUUUAUAACAGCCA----AG-----UUGGCUGACUGAA-ACGCAGCGGCUGAGA-GCGGGAAAAUCCCUGGGGGAAUGG---GGCUGNNNNNNNNNNNNN----------
..................(((((.----..-----(..((((.(((..-...)))))))..)..-..(((.....)))...........---))))).............---------- ( -23.50)
>DroEre_CAF1 45039 96 - 1
GCGAAAAUUACUUUAUAACAGCCA----AG-----UUGGUUGACUGACUCAGCAGCGGCUGAGAUGCGGGAAAAGUCCUG--GAACUGG---GGCUGCAAAACAACUGAA----------
((................(((((.----..-----..))))).(((.((((((....))))))...)))....((((((.--.....))---))))))............---------- ( -27.00)
>DroYak_CAF1 48375 98 - 1
GUGAAAAUUACUUUAUAACAGCCAACCAAG-----UUGGCUGACUGAA-AAGCAGCGGCGGAGA-GCGGGAAAAGUCCUG--GAAAUGG---GGCUGCAAAACAACUGAA----------
..................((((((((...)-----)))))))......-..(((((..((....-.(((((....)))))--....)).---.)))))............---------- ( -26.90)
>DroAna_CAF1 38857 108 - 1
UCGAAAAUUACUUUAUAACAGCCA----AGUAAAUUUGGCUGACUAAC-AAAGUACAGAUGUGG-CGGGUAAAACGCGUU---GAAAAG---GGGUGCAACAGGGUGUACAGAUGGGGGG
..........((((((..((((((----((....))))))))......-...(((((......(-((.......)))(((---(.....---.....))))....)))))..)))))).. ( -25.40)
>consensus
GCGAAAAUUACUUUAUAACAGCCA____AG_____UUGGCUGACUGAA_AAGCAGCGGCUGAGA_GCGGGAAAAUCCCUG__GGAAUGG___GGCUGCAAAACAACUGAA__________
..................(((((............(((((((.(((......))))))))))....((((......))))............)))))....................... (-14.49 = -15.43 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:54 2006