Locus 8587

Sequence ID X_DroMel_CAF1
Location 21,303,885 – 21,303,978
Length 93
Max. P 0.939383
window14118 window14119

overview

Window 8

Location 21,303,885 – 21,303,978
Length 93
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 73.72
Mean single sequence MFE -26.27
Consensus MFE -12.89
Energy contribution -14.89
Covariance contribution 2.00
Combinations/Pair 1.08
Mean z-score -2.57
Structure conservation index 0.49
SVM decision value 0.96
SVM RNA-class probability 0.890425
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21303885 93 + 22224390
GUUUUUGGACAAAAGGAUAUUUGUUAGCACUGCAUGUGCGUGCGAGUUGCCAGAGCUGUUAGAUUCGGCAACACAAGAGCA------GGAAA-AAAAAUG
(((((((((((((......)))))).((((.((....))))))..((((((.((((.....).))))))))).))))))).------.....-....... ( -27.40)
>DroSec_CAF1 45474 89 + 1
---UUUGGACAAAAGGAUAUUUGUUAGCACUGCAUGUGCGUGCGAGUUGCCGGAGCUGUUAGAUUCGGCAACACAAAAGCA------GGAAA--AAAAUG
---((((((((((......)))))).((((.((....))))))..(((((((((.(.....).))))))))).))))....------.....--...... ( -25.70)
>DroEre_CAF1 43394 83 + 1
GCCUUUGGACA-AAGGAUAUCUGUUGGCUCUGCAUGUGCGUGCGUUUUG----------------UGGCAACACAAAAGCAAAGGCGGGAAGGAAAAAAG
(((((((..((-(.((....)).))).....((((....)))).(((((----------------((....))))))).))))))).............. ( -25.70)
>consensus
G__UUUGGACAAAAGGAUAUUUGUUAGCACUGCAUGUGCGUGCGAGUUGCC_GAGCUGUUAGAUUCGGCAACACAAAAGCA______GGAAA_AAAAAUG
((.((((((((((......)))))).((((.((....))))))..((((((...............)))))).)))).)).................... (-12.89 = -14.89 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 21,303,885 – 21,303,978
Length 93
Sequences 3
Columns 100
Reading direction reverse
Mean pairwise identity 73.72
Mean single sequence MFE -19.08
Consensus MFE -10.68
Energy contribution -12.02
Covariance contribution 1.34
Combinations/Pair 1.12
Mean z-score -2.11
Structure conservation index 0.56
SVM decision value 1.28
SVM RNA-class probability 0.939383
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21303885 93 - 22224390
CAUUUUU-UUUCC------UGCUCUUGUGUUGCCGAAUCUAACAGCUCUGGCAACUCGCACGCACAUGCAGUGCUAACAAAUAUCCUUUUGUCCAAAAAC
.......-.....------.......(.(((((((.............))))))).)((((((....)).))))..(((((......)))))........ ( -18.12)
>DroSec_CAF1 45474 89 - 1
CAUUUU--UUUCC------UGCUUUUGUGUUGCCGAAUCUAACAGCUCCGGCAACUCGCACGCACAUGCAGUGCUAACAAAUAUCCUUUUGUCCAAA---
......--.....------.......(.(((((((.............))))))).)((((((....)).))))..(((((......))))).....--- ( -20.12)
>DroEre_CAF1 43394 83 - 1
CUUUUUUCCUUCCCGCCUUUGCUUUUGUGUUGCCA----------------CAAAACGCACGCACAUGCAGAGCCAACAGAUAUCCUU-UGUCCAAAGGC
.......((((...(.((((((...((((((((..----------------......))).))))).)))))).)....((((.....-))))..)))). ( -19.00)
>consensus
CAUUUUU_UUUCC______UGCUUUUGUGUUGCCGAAUCUAACAGCUC_GGCAACUCGCACGCACAUGCAGUGCUAACAAAUAUCCUUUUGUCCAAA__C
........................(((((((((((.............)))))))..((((((....)).))))..)))).................... (-10.68 = -12.02 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:52 2006