Locus 8586

Sequence ID X_DroMel_CAF1
Location 21,303,447 – 21,303,546
Length 99
Max. P 0.938984
window14117

overview

Window 7

Location 21,303,447 – 21,303,546
Length 99
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 90.85
Mean single sequence MFE -23.32
Consensus MFE -23.66
Energy contribution -24.14
Covariance contribution 0.48
Combinations/Pair 1.08
Mean z-score -1.33
Structure conservation index 1.01
SVM decision value 1.27
SVM RNA-class probability 0.938984
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21303447 99 + 22224390
GCGAUGAACAUAAUAAAACGAAAUCGAGGAGGCAGUAAAAGCCAGAAAGGGAAAAAACUCACACUGGCUCAAGCUUUUUCGACAAGGUCCUUGCCAUGG
.......................((((((((((......((((((...(((......)))...))))))...))))))))))((.(((....))).)). ( -24.70)
>DroSec_CAF1 45052 98 + 1
GCGAUGAACAUAAUAAAACGAAAUCGAGGAGGCAGUAAAAGCCAGAAAGGGAA-AAUCUCACACUGGCUCAAGCUUUUUCGACAAGGUCCUUGCCAUGG
.......................((((((((((......((((((...(((..-...)))...))))))...))))))))))((.(((....))).)). ( -25.50)
>DroSim_CAF1 42568 98 + 1
GCGAUGAACAUAAUAAAACGAAAUCGAGGAGGCAGUAAAAGCCAGAAAGGGAA-AAUCUCACACUGGCUCAAGCUUUUUCGACAAGGUCCUUGCCAUGG
.......................((((((((((......((((((...(((..-...)))...))))))...))))))))))((.(((....))).)). ( -25.50)
>DroEre_CAF1 43045 87 + 1
-----GAACAAAAUAA-----AAUCGA-GGGGCAGUAAAAGCCAGAAAGGGAA-AAUCCCACACCGGCUCAAGCUUUUUCGACAAGGUCCUGGCCGUGG
-----...........-----..((((-(((((.......))).....(((..-...)))...))(((....)))...))))((.(((....))).)). ( -21.00)
>DroYak_CAF1 46113 98 + 1
GCGAUGAACAAAAUAAAACGAAAUCGAUGAGGCAGUAAAAGCCGGAAAGGGAA-AAUCUCACACGGGCUCAAGCUUUUUCGACAAGGUCCUUGCCGUGG
.......................((((.(((((......((((.(...(((..-...)))...).))))...))))).))))((.(((....))).)). ( -19.90)
>consensus
GCGAUGAACAUAAUAAAACGAAAUCGAGGAGGCAGUAAAAGCCAGAAAGGGAA_AAUCUCACACUGGCUCAAGCUUUUUCGACAAGGUCCUUGCCAUGG
.......................((((((((((......((((((...(((......)))...))))))...))))))))))((.(((....))).)). (-23.66 = -24.14 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:48 2006