| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,300,657 – 21,300,753 |
| Length | 96 |
| Max. P | 0.975972 |
| Location | 21,300,657 – 21,300,753 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 76.30 |
| Mean single sequence MFE | -25.26 |
| Consensus MFE | -12.01 |
| Energy contribution | -13.74 |
| Covariance contribution | 1.73 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.48 |
| SVM decision value | 1.76 |
| SVM RNA-class probability | 0.975972 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21300657 96 - 22224390 UUGAAAAGCUGCAAAGGGUGCACUGGCAAAAAAAGUGGGUACAUUUGGCCGAGGCGGGCGUGGCAGGAAGUCGAAGUGGAAGGCAGCCCAAAAAAA .......((((((.....)))..((((.....(((((....))))).)))).)))((((...((......((......))..)).))))....... ( -23.70) >DroSec_CAF1 41958 85 - 1 UUGAA-AGCAGCAAAGGCUGCACUGGCAAA-AAAGUGGGUACAUUUGGCCGAGGCGGGCGUGGCAGGAA------GUGGAAGGCAGGCCAGAA--- .....-.(((((....)))))..((((...-.(((((....))))).)))).(((..((.(..((....------.))..).))..)))....--- ( -26.20) >DroSim_CAF1 39512 91 - 1 UUGAA-AGCAGCAAAGGCUGCACUGGCAAA-AAAGUGGGUACAUUUGGCCGAGGCGGGCGUGGCAGGAAGUCGAAGUGGAAGGCAGGCCAGAA--- .....-.(((((....))))).(((((...-.(((((....))))).(((...((.....((((.....))))..))....)))..)))))..--- ( -28.30) >DroEre_CAF1 39704 75 - 1 UUGAAAGGCAGCAAAGGCUGCACUGCCAAA-AAAGGGGGUACAUUU-----------------CAGGAAGUCGCAGGGGAAGGCGGGCCAGAA--- .(((((.(((((....)))))(((.((...-...)).)))...)))-----------------))((...((((........)))).))....--- ( -22.50) >DroYak_CAF1 43336 77 - 1 UUGAAAAGCAGCACGGGCUGCACUGCAAAA-AAAGUGUGCACACUUGG---------------CAAGAAGUCGCAGUGGAAGGCAGGCCGGAA--- .............(((.(((((((((....-.(((((....)))))((---------------(.....)))))))).....)))).)))...--- ( -25.60) >consensus UUGAAAAGCAGCAAAGGCUGCACUGGCAAA_AAAGUGGGUACAUUUGGCCGAGGCGGGCGUGGCAGGAAGUCGAAGUGGAAGGCAGGCCAGAA___ .......(((((....))))).(((((.....(((((....))))).(((......)))...........................)))))..... (-12.01 = -13.74 + 1.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:47 2006