Locus 8584

Sequence ID X_DroMel_CAF1
Location 21,299,422 – 21,299,517
Length 95
Max. P 0.768833
window14115

overview

Window 5

Location 21,299,422 – 21,299,517
Length 95
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 71.76
Mean single sequence MFE -13.38
Consensus MFE -9.02
Energy contribution -9.74
Covariance contribution 0.72
Combinations/Pair 1.07
Mean z-score -1.33
Structure conservation index 0.67
SVM decision value 0.52
SVM RNA-class probability 0.768833
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21299422 95 - 22224390
UCUCUCUCGCCUUC------UU------UCCGCCUUCUCUUUGCCGGCUCAUGCAGCAGCGUUAAAUAAACACAAUUUUCGCAGCUGUCCCGCCCCCUUUUCCAUUU
..............------..------.................(((....(((((.(((..((((.......)))).))).)))))...)))............. ( -14.70)
>DroPse_CAF1 81906 104 - 1
UCUUGACUGCUCCUCCCUUAUGCCUCUGCCCAUCUACCCUUUGCUCUCUCGUGCA---GCGCUAAAUAAACACAAUUUUCGCAGCUGUCCCGGCCCUCUCCCAAUCU
....(((.(((..............................(((........)))---(((..((((.......)))).)))))).)))..((.......))..... ( -11.40)
>DroSec_CAF1 40802 84 - 1
UCUCUCC-----------------------CGCCUUCUCUUUGCCGGCUCAUGCAGCAGCGUUAAAUAAACACAAUUUUCGCAGCUGUCCCGCCCCCUUUUCCAUUU
.......-----------------------...............(((....(((((.(((..((((.......)))).))).)))))...)))............. ( -14.70)
>DroSim_CAF1 38348 84 - 1
UCUCUCC-----------------------CGCCUUCUCUUUGCCGGCUCAUGCAGCAGCGUUAAAUAAACACAAUUUUCGCAGCUGUCCCGCCCCCUUUUCCAUUU
.......-----------------------...............(((....(((((.(((..((((.......)))).))).)))))...)))............. ( -14.70)
>DroPer_CAF1 59558 104 - 1
UCUUGACUGCUCCUCCCUUAUGCCUCUGCCCAUCUACCCUUUGCUCUCUCGUGCA---GCGCUAAAUAAACACAAUUUUCGCAGCUGUCCCGGCCCUCUCCCAAUCU
....(((.(((..............................(((........)))---(((..((((.......)))).)))))).)))..((.......))..... ( -11.40)
>consensus
UCUCUCC_GC__________U________CCGCCUUCUCUUUGCCGGCUCAUGCAGCAGCGUUAAAUAAACACAAUUUUCGCAGCUGUCCCGCCCCCUUUUCCAUUU
.............................................(((....(((((.(((..((((.......)))).))).)))))...)))............. ( -9.02 =  -9.74 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:47 2006