Locus 8583

Sequence ID X_DroMel_CAF1
Location 21,297,482 – 21,297,577
Length 95
Max. P 0.523963
window14114

overview

Window 4

Location 21,297,482 – 21,297,577
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 87.46
Mean single sequence MFE -21.94
Consensus MFE -15.54
Energy contribution -16.06
Covariance contribution 0.52
Combinations/Pair 1.27
Mean z-score -1.66
Structure conservation index 0.71
SVM decision value -0.02
SVM RNA-class probability 0.523963
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21297482 95 - 22224390
UCAUUUUUGCUAAUUACGGUGAGAUUAUUUUUAUCGUGUAGAAGUAAAGAGUGCAAAAAGCAUUGAGUUGCUUCUUUGACAUAAAUGCUGUGCAA
...((((((((...((((((((((....))))))))))....)))))))).((((...((((((..(((........)))...)))))).)))). ( -27.20)
>DroSec_CAF1 38571 94 - 1
UAAUUUUUGCUAAUUACGAUGAGAU-AUUUUUAUCGUGUAGAAGAAAAGAGUGCUAAAAGCGUUGUGUUGCUUCUUUGACAUAAAUGCUGUGCAA
...(((((.(((..((((((((((.-..))))))))))))).)))))....(((....(((((((((((........))))).))))))..))). ( -22.50)
>DroSim_CAF1 35427 94 - 1
UAAUUUUUGCUAAUUACGGUGAGAU-AUUUUUAUCGUGUAGAAGAAAAGAGUGCUAAAAGCGUUGAGUUGCUUCUUUGACAUAAAUGCUGUGCAA
...(((((.(((..((((((((((.-..))))))))))))).)))))....(((....((((((..(((........)))...))))))..))). ( -19.30)
>DroEre_CAF1 36882 95 - 1
UCAUAUUCGCUUAUCAGGAAGAGAUUAUUUUUUCGGUGUAGAAAGAAAGAGUGCAAAAAGCAUUGAGUUGCUUCUUUGACAUAAAUGCUGUGCGA
......((((....(((.(........(((((((......)))))))...((((((((((((......))))).)))).)))...).))).)))) ( -20.40)
>DroYak_CAF1 39584 94 - 1
UCAUUUUCUCUAAUUAAGGCGGGAUUCUUUUUUCCGUGUAGAAA-AAAGAGUGAAAAAAGCAUUGAGUUGCUUCUUUGACAUAAAUGCUGUGCGA
..................((((.(((((((((((......))))-)))))((.(((.(((((......))))).))).))....)).)))).... ( -20.30)
>consensus
UCAUUUUUGCUAAUUACGGUGAGAUUAUUUUUAUCGUGUAGAAGAAAAGAGUGCAAAAAGCAUUGAGUUGCUUCUUUGACAUAAAUGCUGUGCAA
.........(((..((((((((((....)))))))))))))..........((((...((((((..(((........)))...)))))).)))). (-15.54 = -16.06 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:46 2006