| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,295,762 – 21,295,862 |
| Length | 100 |
| Max. P | 0.561084 |
| Location | 21,295,762 – 21,295,862 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 67.90 |
| Mean single sequence MFE | -31.05 |
| Consensus MFE | -10.80 |
| Energy contribution | -10.88 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.35 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.561084 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21295762 100 + 22224390 --------CGCACACCAUUCCGC----UUGCCAUCUUCC-A-CUAGGUGGCAAAUAGUUUCCAUAAUGUGCCCUGCUG---U-GCGGAUGCCC-AGAAGCUGGAAUUCC-GUCGCCUGGU --------.(((......(((((----(((((((((...-.-..)))))))))(((((...(((...)))....))))---)-))))))))((-((..(.(((....))-).)..)))). ( -31.80) >DroPse_CAF1 76780 103 + 1 --------GGCAACGCAUUCCGG----UGGCCUUCUCCU-G-CUAGGUGGCAAAUAGUUUCUAUAAUAUGCUUUGCUGCUCU-CCGGCUACCA-CAGCCAUAUCCUUAC-ACCGCCUGGU --------(((..((.....)).----..))).......-(-((((((((...................((......))...-..((((....-.))))..........-.))))))))) ( -26.20) >DroEre_CAF1 34806 109 + 1 CAAUUUGCCGCCCAGCAUUCCGC----UCACCAUCUUCC-A-CUAGGUGGCAAAUAGUUUCCAUAAUGUGCCCUGCUG---U-GCGGAUGCCC-AGGAACUGGAAUUCCAGUCGCCUGGU .......((((.(((((...(((----...((((((...-.-..))))))......(((.....))))))...)))))---.-))))....((-(((.(((((....)))))..))))). ( -37.60) >DroYak_CAF1 37559 109 + 1 AAAUCUCCCGCCCAGCAUUCCAC----UCGCCAUCUUCC-A-CUAGGUGGCAAAUAGUUUCCAUAAUGUGCCCUGCUG---U-GCGGACGCCC-AGGAACUGGAAUUCCAGUCGCCUGGU .......((((.(((((...(((----..(((((((...-.-..))))))).....(((.....))))))...)))))---.-))))....((-(((.(((((....)))))..))))). ( -42.60) >DroAna_CAF1 29811 103 + 1 --------UCUCCAGUAUCCCGCCAUCCUGCCAUCCUGCCAUCGAGGUGGCAAAUAGUUUCCAUAAUAUGCUCCGCUG---ACUUGGAUGCGCGAGCAACUCU--UUCUCUUCUCC---- --------............(((((((((((((.(((.......))))))))..((((...(((...)))....))))---....))))).))).........--...........---- ( -21.90) >DroPer_CAF1 54481 103 + 1 --------GGCAACGCAUUCCGG----UGGCCUUCUCCU-G-CUAGGUGGCAAAUAGUUUCUAUAAUAUGCUUUGCUGCUCU-CCGGCUACCA-CAGCCAUAUCCUUAC-ACCGCCUGGU --------(((..((.....)).----..))).......-(-((((((((...................((......))...-..((((....-.))))..........-.))))))))) ( -26.20) >consensus ________CGCACAGCAUUCCGC____UCGCCAUCUUCC_A_CUAGGUGGCAAAUAGUUUCCAUAAUAUGCCCUGCUG___U_GCGGAUGCCC_AGGAACUGGAAUUCC_GUCGCCUGGU ...................((((......(((((((........)))))))...((((...(((...)))....)))).....))))................................. (-10.80 = -10.88 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:45 2006