| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,294,368 – 21,294,467 |
| Length | 99 |
| Max. P | 0.644301 |
| Location | 21,294,368 – 21,294,467 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 65.35 |
| Mean single sequence MFE | -34.58 |
| Consensus MFE | -14.99 |
| Energy contribution | -15.10 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.43 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.644301 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21294368 99 - 22224390 UACGUUGG---------GUGCUGACUACAUGCUAUGAUCCUUCUGAA-------GAGCGCAAGUUCGUGAAUUGGGCCACCGCAUAAACGUAGAAAAGAGCAGCGCCGGCAGCGA ..((((((---------((((((.((((((((..((..((.......-------((((....)))).......))..))..))))....)))).......)))))))..))))). ( -34.34) >DroEre_CAF1 33303 95 - 1 AACUUUAG--------------------CUGCUGAGAUCCUUUUUCGUGAGCGCGAGCGCGAGUUCGUGAACUGGGCCACCGCAUAAACGCGGAAAAGAGCAGCGCCGCAAGCGA .......(--------------------(((((......((((((((((..(((((((....)))))))....((....)).......))))))))))))))))(.(....)).. ( -36.20) >DroYak_CAF1 35927 108 - 1 AGCCAAAGUACUUCGAAGUACUGACUAUGAGCAAAAAUCCCUUUUCA-------GAGCGCGAGUUCGUGAAUUGGAGCACCGCAUAAACGUGGAAAAGAGCAGCGCAAGCAGCGC .((((.((((((....)))))).....)).)).......((..((((-------((((....)))).))))..)).((.((((......))))......((.((....)).)))) ( -33.20) >consensus AACCUUAG_________GU_CUGACUA_AUGCUAAGAUCCUUUUUCA_______GAGCGCGAGUUCGUGAAUUGGGCCACCGCAUAAACGUGGAAAAGAGCAGCGCCGGCAGCGA ..............................((......................((((....)))).............((((......))))......))..(((.....))). (-14.99 = -15.10 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:44 2006