Locus 8580

Sequence ID X_DroMel_CAF1
Location 21,293,905 – 21,294,010
Length 105
Max. P 0.500000
window14111

overview

Window 1

Location 21,293,905 – 21,294,010
Length 105
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.71
Mean single sequence MFE -20.69
Consensus MFE -13.49
Energy contribution -14.47
Covariance contribution 0.97
Combinations/Pair 1.08
Mean z-score -1.65
Structure conservation index 0.65
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21293905 105 - 22224390
GUUAAGUGUUUAACAUAAUAAACACGCGUAUUACGAGGGAAUUAACAUGACAUUUAACAACGCAACCGAGACAAAACCCAA--------------CGAAAGCUACA-ACAAUUUGUUGCU
((((((((((.....((((...(...((.....))..)..))))....))))))))))...(((((.((............--------------(....).....-....)).))))). ( -16.50)
>DroPse_CAF1 74422 119 - 1
GCUAAGUGUUUAACAUAAUGAACACGGGUAUUACGAGGGAAUUAACAUGACAUUUAACAACGUAACUCAAACAACACACAAUAGCAGCAAACACACAAAAGCAACA-ACAAUUUGUUGCU
((((.(((((((......)))))))((((..((((..(...................)..)))))))).............))))..............(((((((-(....)))))))) ( -24.21)
>DroEre_CAF1 32864 105 - 1
GUUAAGUGUUUAACAUAAUGAACACGCGUAUUACGAGGGAAUUAACAUGGCAUUUAACAACGCAACCGAGACAUAACCCAA--------------CGAAAGCUACA-ACAAUUUGUAGCU
((((.(((((((......)))))))((((.......(........).((........))))))..........))))....--------------....(((((((-(....)))))))) ( -20.30)
>DroYak_CAF1 35443 105 - 1
GUUAAGUGUUUAACAUAAUGAACACGCGUAUUACGAGGGAAUUAACAUGACAUUUAACAACGCCACCGAGACAAAACCCAA--------------CGAAAGCUACA-ACAAUUUGUAGCU
((((((((((.....((((...(...((.....))..)..))))....)))))))))).......................--------------....(((((((-(....)))))))) ( -20.60)
>DroAna_CAF1 28053 103 - 1
GUUAAGUGUUUAACAUAAUGAACACGCGUAUUACGAGGGAAUUAACAUGACAUUUAACAACGCCACCGAGACCAGAUCCGG--------------CCAUCGCCAAAUACGAAUUGU---U
.....(((((((......))))))).((((((.((..((..((((........)))).....))..))...........((--------------(....))).))))))......---. ( -18.30)
>DroPer_CAF1 52106 119 - 1
GCUAAGUGUUUAACAUAAUGAACACGGGUAUUACGAGGGAAUUAACAUGACAUUUAACAACGUAACUCAAACAACACACAAUAGCAGCAAACACACAAAAGCAACA-ACAAUUUGUUGCU
((((.(((((((......)))))))((((..((((..(...................)..)))))))).............))))..............(((((((-(....)))))))) ( -24.21)
>consensus
GUUAAGUGUUUAACAUAAUGAACACGCGUAUUACGAGGGAAUUAACAUGACAUUUAACAACGCAACCGAGACAAAACCCAA______________CGAAAGCUACA_ACAAUUUGUUGCU
((((((((((.....((((...(.((.......)).)...))))....)))))))))).........................................(((((((.......))))))) (-13.49 = -14.47 +   0.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:43 2006