Locus 8578

Sequence ID X_DroMel_CAF1
Location 21,278,565 – 21,278,664
Length 99
Max. P 0.630253
window14108

overview

Window 8

Location 21,278,565 – 21,278,664
Length 99
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 79.57
Mean single sequence MFE -22.70
Consensus MFE -16.20
Energy contribution -16.15
Covariance contribution -0.05
Combinations/Pair 1.17
Mean z-score -1.22
Structure conservation index 0.71
SVM decision value 0.20
SVM RNA-class probability 0.630253
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21278565 99 + 22224390
----GGC------UGCUG-AAAAAAUGAUGCCAUAAAGUUGAUUAGAAGUCACUUAAUGGCAGCGGAUGUGCAGGUUUAUUACAAUUUGUAACGAGAGCCCC---G-AAAG--CUU
----(((------(.((.-.........((((((.((((.(((.....))))))).)))))).((....((((((((......)))))))).)))))))).(---.-...)--... ( -25.40)
>DroPse_CAF1 33018 99 + 1
----GUA------AGCCGAAAAAAAUGAUGCCAUAAAGUUGAUUAGAAGUCACUUAAUGGCAGCGGAUGUGCAGGUUUAUUACAAUUUGUAACGAGAGCUCUUCCA-GAC------
----...------...............((((((.((((.(((.....))))))).))))))..(((.(.((...((..((((.....))))..)).)).).))).-...------ ( -22.70)
>DroGri_CAF1 22076 105 + 1
GGAGCUAA-----AGAUA-AAAAAAUGAUGCCAUAAAGUUUAUUAGAAGUCGCUUAAUGGCAACGGAUGUGCGAGUUUAUUACAAUUUGUAACGAGAGCUCUC--A-AAAG--CUG
((((((..-----.....-.........((((((.((((............)))).)))))).((....((((((((......)))))))).))..)))))).--.-....--... ( -23.50)
>DroMoj_CAF1 32404 109 + 1
GAAGCAG-AAAAAAUAAA-AAAAAAAGAUGCCAUAAAGUUUAUUAGAAGUCGCUUAAUGGCAACGGAUGUGCAAGUUUAUUACAAUUUGUAACGAGAGCUCUC--A-AGAG--CUG
.......-..........-.........((((((.((((............)))).)))))).((....((((((((......)))))))).))..(((((..--.-.)))--)). ( -22.80)
>DroAna_CAF1 15942 105 + 1
----CCG------AACUG-AAAAAAUGAUGCCGUAAAGUUGAUUAGAAGUCACUUAAUAGCAGCGGAUGUUCAGGUUUAUUACAAUUUGUAACGAGAGCCCCUCUGAAAAGCACUC
----...------..(((-((....((.(((..(.((((.(((.....))))))).)..))).))....)))))((((.((((.....)))).(((.....)))....)))).... ( -19.10)
>DroPer_CAF1 30128 99 + 1
----GUA------AGCCGAAAAAAAUGAUGCCAUAAAGUUGAUUAGAAGUCACUUAAUGGCAGCGGAUGUGCAGGUUUAUUACAAUUUGUAACGAGAGCUCUUCCA-GAC------
----...------...............((((((.((((.(((.....))))))).))))))..(((.(.((...((..((((.....))))..)).)).).))).-...------ ( -22.70)
>consensus
____CUA______AGCUG_AAAAAAUGAUGCCAUAAAGUUGAUUAGAAGUCACUUAAUGGCAGCGGAUGUGCAGGUUUAUUACAAUUUGUAACGAGAGCUCUU__A_AAAG__CU_
............................((((((.((((.(((.....))))))).)))))).((....((((((((......)))))))).))...................... (-16.20 = -16.15 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:40 2006