Locus 8576

Sequence ID X_DroMel_CAF1
Location 21,266,587 – 21,266,683
Length 96
Max. P 0.922016
window14104

overview

Window 4

Location 21,266,587 – 21,266,683
Length 96
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 78.95
Mean single sequence MFE -26.91
Consensus MFE -18.09
Energy contribution -18.65
Covariance contribution 0.56
Combinations/Pair 1.20
Mean z-score -2.03
Structure conservation index 0.67
SVM decision value 1.14
SVM RNA-class probability 0.922016
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21266587 96 - 22224390
UCCCUU----------------GUGCGCAGGUGUGCGUGUGAGGAUGCAUUUUAUAUUAAAUAAUGAAGUGUGUAAAAUGUAUGCAGUGGCACACAAAAAGAGCAAAGAGGC
..((((----------------.((((((....)))(((((.(.(((((((((((((.............))))))))))))).).....))))).......)))..)))). ( -27.42)
>DroPse_CAF1 21683 108 - 1
UCCUUUCAAUGUGAUUCCGAGUAUGCGUGAGUGCGUAUUUGGGAAUGCAUUUUUUAAUAAAUAUUGAAGAGCCCACCUUAUAUGCCCCAACAAACCCAAAGAGAGA----AA
..(((((.(((((.(((((((((((((....))))))))))))).)))))((((((((....))))))))..............................))))).----.. ( -25.70)
>DroSec_CAF1 13022 96 - 1
UCCCUU----------------GUGCGCAGGUGUGCGUGUGGGGAUGCAUUUUAUAUUAAAUAAUGAAGUGUGUACAAUGUAUGCAGUGGCACACAAACCGAGCAAAGAGGC
..((((----------------.(((...(((.((.((((..(.(((((((.(((((.............))))).))))))).)....)))).)).)))..)))..)))). ( -27.22)
>DroSim_CAF1 24568 96 - 1
UCCCUU----------------GUGCGCAGGUGUGCGUGUGAGGAUGCAUUUUAUAUUAAAUAAUGAAGUGUGUACAAUGUAUGCAGUGGCACACAAAAGGAGCAAAGAGGC
(((.((----------------(((.((..((((((((.((...(((((((((((........))))))))))).))))))))))....)).)))))..))).......... ( -26.90)
>DroEre_CAF1 13006 94 - 1
UC-CUU----------------GUGCGCAGGUGUGCGUGUGAGGAUGCAUUUUAUAUUAAAUAAUGAAGUGUGUACAAUGUAUGCAGUGGCACA-AAAAAGAGCAAAGACCA
((-((.----------------.((((((....))))))..))))((((((((((........)))))))((((.((.((....)).)))))).-.......)))....... ( -25.50)
>DroYak_CAF1 14647 96 - 1
UCCCCU----------------GUGCGCAGGUGUGCGUGUGAGGAUGCAUUUUAUAUUAAAUAAUGAAGUGUGUACAUUGUAUGCAGUGGCACACAAAAAGAGCAAAGUGGC
..((((----------------.(((....((((((........(((((((((((........))))))))))).(((((....))))))))))).......))).)).)). ( -28.70)
>consensus
UCCCUU________________GUGCGCAGGUGUGCGUGUGAGGAUGCAUUUUAUAUUAAAUAAUGAAGUGUGUACAAUGUAUGCAGUGGCACACAAAAAGAGCAAAGAGGC
......................((((.((.((((((((......(((((((((((........)))))))))))...))))))))..))))))................... (-18.09 = -18.65 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:35 2006