Locus 8575

Sequence ID X_DroMel_CAF1
Location 21,261,339 – 21,261,431
Length 92
Max. P 0.577606
window14103

overview

Window 3

Location 21,261,339 – 21,261,431
Length 92
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 81.60
Mean single sequence MFE -29.30
Consensus MFE -16.58
Energy contribution -15.90
Covariance contribution -0.68
Combinations/Pair 1.37
Mean z-score -1.93
Structure conservation index 0.57
SVM decision value 0.09
SVM RNA-class probability 0.577606
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21261339 92 + 22224390
GCGAGAGGAUGGAAACCGCAAACGAAAGCAGGGCUUGCCAUAUGCAUAUGUGUGUGCUUGCACUGGGAAAAAAUUUC---UAGGUGCAUCAUGUA
(((((.((.(....)))((........))....)))))(((((((....)))))))..((((((.((((.....)))---).))))))....... ( -23.50)
>DroSec_CAF1 9184 95 + 1
GCGAGAGGAGGGAAACCGCAAACGAAAGCAGGGCUUGCCAUAUGCAUAUGUGUGUGCCUGCACUGGGAAAAAUUUCCAGGUAGGUGCAUCAUGCA
(((((....((....))((........))....)))))....(((((....(((..(((((.((((((.....)))))))))))..))).))))) ( -37.60)
>DroSim_CAF1 19856 95 + 1
GCGAGAGGAUGGAAACCGCAAACGAAAGCAGGGCUUGCCAUAUGCAUAUGUGUGUGCCUGCACUGGGAAAAAUUUCCAGGUAGGUGCAUCAUGCA
(((((.((.(....)))((........))....)))))....(((((....(((..(((((.((((((.....)))))))))))..))).))))) ( -33.50)
>DroEre_CAF1 9424 84 + 1
GCGAGAGGGAGGAGACCUCAAACGAAAGCAGGGCUUGCUGUGUGCAUGUGUGUGCGCCUGCACUGAGAACAAAUUCC----GUGAGUA-------
((....(((((....)((((.......((((......))))(((((.(((....))).)))))))))......))))----....)).------- ( -22.90)
>DroYak_CAF1 9979 91 + 1
GCGAGAGGGUGGAAACCUCAAACGAAAGCAGGGUUUGCUAUGUGCACAUGUGUGCGCUUGCACUGAGAACAAAUUCU----GGGAGCAUUACUCA
....(((.((((((((((....(....)..)))))).))))((((((....)))))).(((.((.((((....))))----.)).)))...))). ( -29.00)
>consensus
GCGAGAGGAUGGAAACCGCAAACGAAAGCAGGGCUUGCCAUAUGCAUAUGUGUGUGCCUGCACUGGGAAAAAAUUCC___UAGGUGCAUCAUGCA
(((.......((((........(....)(((.((..((.(((..(....)..)))))..)).)))........)))).......)))........ (-16.58 = -15.90 +  -0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:34 2006