Locus 8574

Sequence ID X_DroMel_CAF1
Location 21,260,486 – 21,260,589
Length 103
Max. P 0.914935
window14102

overview

Window 2

Location 21,260,486 – 21,260,589
Length 103
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 90.56
Mean single sequence MFE -29.08
Consensus MFE -23.02
Energy contribution -24.86
Covariance contribution 1.84
Combinations/Pair 1.09
Mean z-score -1.97
Structure conservation index 0.79
SVM decision value 1.10
SVM RNA-class probability 0.914935
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21260486 103 + 22224390
GAACUGACUUAAUGGCGAAACAAUGUAAUCUGUGAUUGAUAGUCGCUGGAAAGGCUGUUCAGAACAUGUCACAGAUUAUUUGAAUGUGCGUCCAGUGUUAGUG
..((((((....(((((..(((..((((((((((((((((((((........))))).)))......)))))))))))).....))).)).)))..)))))). ( -32.00)
>DroSec_CAF1 8382 103 + 1
GAACUGACUUAAUGGCGAAACAAUGUAAUCCGUGAUUGAUAGUCGCUGGAAAGGCUGUUCAGAAUAUGUCACACAUUAUUUGAAUGUGCGUCCAGUGUUAGUG
..(((((((((((.(((.............))).))))).....((((((...((((((((((..(((.....)))..)))))))).)).)))))))))))). ( -27.72)
>DroSim_CAF1 19036 103 + 1
GAACUGACUUAAUGGCGAAACAAUGUAAUCCGUGAUUGAUAGUCGCUGGAAAGGCUGUUCAGAAUAUGUCACACAUUAUUUGAAUGUGCGUCCAGUGUUAGUG
..(((((((((((.(((.............))).))))).....((((((...((((((((((..(((.....)))..)))))))).)).)))))))))))). ( -27.72)
>DroEre_CAF1 8693 101 + 1
GGGCUGACUUAAUGGCGAAACAAUGUAAUCUGUGACUGAUAAUCGCUGGAAAGGGUCUUCAGCAGAUGUCACAGAUUAUUCGAAUGUGCGUCCAGAAGCAG--
...(((.(((...((((..(((..((((((((((((.....(((((((((.......)))))).))))))))))))))).....))).))))...))))))-- ( -32.00)
>DroYak_CAF1 9100 101 + 1
GGGCUGACUUAAUGGCGAAACAAUGUAAUCUGUGAUUGAUAGUUGCUGGAAAGGCUGUUCAGAAGAUGUCACAGAUUAUUUGAAUGUGCGUCCAGAAACAG--
((((...(.....)(((.......(((((((((((((((((((..((....)))))).)))......)))))))))))).......)))))))........-- ( -25.94)
>consensus
GAACUGACUUAAUGGCGAAACAAUGUAAUCUGUGAUUGAUAGUCGCUGGAAAGGCUGUUCAGAAGAUGUCACAGAUUAUUUGAAUGUGCGUCCAGUGUUAGUG
..((((((....(((((..(((..((((((((((((((((((((........))))).)))......)))))))))))).....))).)).)))..)))))). (-23.02 = -24.86 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:33 2006