Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,252,904 – 21,253,020 |
Length | 116 |
Max. P | 0.994408 |
Location | 21,252,904 – 21,253,020 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 89.74 |
Mean single sequence MFE | -31.27 |
Consensus MFE | -27.33 |
Energy contribution | -29.70 |
Covariance contribution | 2.37 |
Combinations/Pair | 1.10 |
Mean z-score | -3.09 |
Structure conservation index | 0.87 |
SVM decision value | 2.48 |
SVM RNA-class probability | 0.994408 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21252904 116 + 22224390 ACGGGAAAAUCAAGCAGGCAUAACGUAGUUAAAGCUGGAAUACAGGUAAAUCGAUUAAAGUCAAGUGGUCGAUUAC-CAUAUUCUAGCCAUUCGAUAGUGCAGGAUUAUCGUAAUAA ((((...((((..((((((........)))...(((((((((..(((((.(((((((........)))))))))))-).)))))))))..........)))..)))).))))..... ( -30.40) >DroSec_CAF1 635 117 + 1 ACGGGAAAAUCAAGCAAGCAUAACGUAGUAAAAGCUGGAAUACAGAUAAAUCGAUUACAGUAAAGUGCUCGAUUACCCAUAUUCCAGCGAUUCGAUAGUGCAGGAUUAUCGUAAUAA ((((...((((..(((....((.((.(((....(((((((((......((((((.(((......))).)))))).....))))))))).))))).)).)))..)))).))))..... ( -30.70) >DroEre_CAF1 576 116 + 1 ACGGGAAAAUCAAGCAAGCAUAACGUGGUAAAAGCUGGAAUAUAUGUAAAUCGAUUACAGU-GAGUGAUCGAUUACCAAUAUUCGAGCCAUUCGACAGUGCAGGAUUAUCGUAAUAA ((((...((((..(((.(.....)((.(.....(((.((((((.((..((((((((((...-..))))))))))..)))))))).)))....).))..)))..)))).))))..... ( -30.90) >DroYak_CAF1 746 117 + 1 ACGGUAAAACCAAGCAAGCAUAACGUAGUAAAAGCCGGAAUGUAGGUAAAUCGAUUACUGUAGAGUUGUCGAUUACCAAUAUUCCAGCCAUUCGAUAGUGCAGGAUUAUCGUAAUAA (((((((..((..(((....((.((.(((....((.(((((((.(((((.(((((.(((....))).)))))))))).))))))).)).))))).)).))).)).)))))))..... ( -33.10) >consensus ACGGGAAAAUCAAGCAAGCAUAACGUAGUAAAAGCUGGAAUACAGGUAAAUCGAUUACAGUAAAGUGGUCGAUUACCAAUAUUCCAGCCAUUCGAUAGUGCAGGAUUAUCGUAAUAA ((((...((((..(((....((.((.(((....((((((((((.(((((.((((((((......))))))))))))).)))))))))).))))).)).)))..)))).))))..... (-27.33 = -29.70 + 2.37)
Location | 21,252,904 – 21,253,020 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 89.74 |
Mean single sequence MFE | -27.13 |
Consensus MFE | -24.64 |
Energy contribution | -26.07 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.11 |
Mean z-score | -2.39 |
Structure conservation index | 0.91 |
SVM decision value | 2.07 |
SVM RNA-class probability | 0.987181 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21252904 116 - 22224390 UUAUUACGAUAAUCCUGCACUAUCGAAUGGCUAGAAUAUG-GUAAUCGACCACUUGACUUUAAUCGAUUUACCUGUAUUCCAGCUUUAACUACGUUAUGCCUGCUUGAUUUUCCCGU .......((.((((..(((.........((((.(((((((-((((((((..............)))).))))).)))))).)))).((((...))))....)))..)))).)).... ( -22.34) >DroSec_CAF1 635 117 - 1 UUAUUACGAUAAUCCUGCACUAUCGAAUCGCUGGAAUAUGGGUAAUCGAGCACUUUACUGUAAUCGAUUUAUCUGUAUUCCAGCUUUUACUACGUUAUGCUUGCUUGAUUUUCCCGU .......((.((((..(((..........((((((((((((((((((((..((......))..)))).)))))))))))))))).........(.....).)))..)))).)).... ( -33.30) >DroEre_CAF1 576 116 - 1 UUAUUACGAUAAUCCUGCACUGUCGAAUGGCUCGAAUAUUGGUAAUCGAUCACUC-ACUGUAAUCGAUUUACAUAUAUUCCAGCUUUUACCACGUUAUGCUUGCUUGAUUUUCCCGU .......((.((((..(((..((..(((((((.((((((((..(((((((.((..-...)).)))))))..)).)))))).)))........))))..)).)))..)))).)).... ( -24.90) >DroYak_CAF1 746 117 - 1 UUAUUACGAUAAUCCUGCACUAUCGAAUGGCUGGAAUAUUGGUAAUCGACAACUCUACAGUAAUCGAUUUACCUACAUUCCGGCUUUUACUACGUUAUGCUUGCUUGGUUUUACCGU .....(((.(((.((.(((....((...(((((((((...(((((((((..(((....)))..)))).)))))...))))))))).......)).......)))..))..))).))) ( -28.00) >consensus UUAUUACGAUAAUCCUGCACUAUCGAAUGGCUGGAAUAUGGGUAAUCGACCACUCUACUGUAAUCGAUUUACCUAUAUUCCAGCUUUUACUACGUUAUGCUUGCUUGAUUUUCCCGU .....(((..((((..(((....((...(((((((((((((((((((((..((......))..)))).))))))))))))))))).......)).......)))..))))....))) (-24.64 = -26.07 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:33 2006