Locus 8572

Sequence ID	X_DroMel_CAF1
Location	21,250,633 – 21,250,723
Length	90
Max. P	0.739587

overview

Window 9

Location	21,250,633 – 21,250,723
Length	90
Sequences	4
Columns	115
Reading direction	reverse
Mean pairwise identity	71.21
Mean single sequence MFE	-20.60
Consensus MFE	-12.12
Energy contribution	-11.50
Covariance contribution	-0.62
Combinations/Pair	1.20
Mean z-score	-1.60
Structure conservation index	0.59
SVM decision value	0.45
SVM RNA-class probability	0.739587
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21250633 90 - 22224390
ACUUCGAUCAUUUUCCUAGGU-----------------------UCCACAGUUUAUGUAACCCCAUCAAAAAGGGUAUCUGGUAGUCCUCGCUACCACUC--UUUCAUUCGUCCG
....(((...........(((-----------------------(..(((.....))))))).......(((((((....((((((....))))))))))--)))...))).... ( -16.00)
>DroSec_CAF1 63808 90 - 1
ACUUCGUGUAUAUUCUUGGGU-----------------------UCCACAGUUUUUGUAACCCCAUCAAAAAGGGUAUCUGGUAGUCUUUGCUACCACUA--UUUCUUUCGUCCG
.........((((((((((((-----------------------(.((.......)).))))).......)))))))).(((((((....)))))))...--............. ( -16.51)
>DroEre_CAF1 48161 114 - 1
ACUUCACUUACUUUCUUAGGUUGGUGAACAACCACAGUGGCUGCUCCACAGUUUUUGUGACCCCAUCAA-UAGGGUAUCUGGUAGUCCUGACUACCUCUCUCUCUCUUUCUUGCG
..((((((.((((....)))).))))))....(((((..((((.....))))..)))))((((......-..))))....((((((....))))))................... ( -30.80)
>DroYak_CAF1 50677 105 - 1
AUUUCACUUAUUUUCUUAGGU-GUUCAACAACCACAAU------UCUACAGUUUAGGUAACCCCAUCAA-AAGGGUAUCUGCUAGUCCCCACUAGCACUC--UCUCUUUCUUGCG
....((((((......)))))-)...............------..........(((((.(((......-..))))))))((((((....))))))....--............. ( -19.10)
>consensus
ACUUCACUUAUUUUCUUAGGU_______________________UCCACAGUUUAUGUAACCCCAUCAA_AAGGGUAUCUGGUAGUCCUCACUACCACUC__UCUCUUUCGUCCG
...........................................................((((.........))))....((((((....))))))................... (-12.12 = -11.50 +  -0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:31 2006