Locus 8571

Sequence ID X_DroMel_CAF1
Location 21,230,305 – 21,230,415
Length 110
Max. P 0.993762
window14098

overview

Window 8

Location 21,230,305 – 21,230,415
Length 110
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 86.36
Mean single sequence MFE -29.30
Consensus MFE -21.72
Energy contribution -22.04
Covariance contribution 0.32
Combinations/Pair 1.23
Mean z-score -3.36
Structure conservation index 0.74
SVM decision value 2.42
SVM RNA-class probability 0.993762
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21230305 110 - 22224390
UAUAACGUAGAAGCCACUUCGAUUGGGCAGACUAACAAAUACCAAAUCGAUGAAAAAUAUGAGCUUGGUGUUUGAAUGUGGAAACAAUUUCCAAAAAUUGACUGCUCAAA
.........((((...))))..((((((((.....((((((((((.(((((.....)).)))..))))))))))(((.(((((.....)))))...)))..)))))))). ( -30.00)
>DroSec_CAF1 42725 109 - 1
UAUAACGUAGAAGCCACUCCAAUUGGGCAGGCAAACAAAUACCAAAUCGAUGAA-AAUAUGAGCUUGGUGUUUGAAUGUGGAAACAAUUUCAAAAAAUGGACUGCCCAAA
......................(((((((((((..((((((((((.(((((...-.)).)))..))))))))))..)))(....)................)))))))). ( -32.00)
>DroSim_CAF1 34198 110 - 1
UAUAACGUAGAAGCCACUCCAAUUGGGCAGGCAAACAAAUACCGAAUCGAUGAAAAAUAUGAGCUUGGUGUUUGAAUGUGGAAACAAUUUCCAAAAAUGGACUGCCCAAA
......................(((((((((((..((((((((((.(((((.....)).)))..))))))))))..)))(....)....((((....)))))))))))). ( -32.50)
>DroEre_CAF1 28419 100 - 1
UAUAACGUUGAAGCCACUCCAAUUGGGCAGGCAAACAAAUGCCGAAUCGACGAAAAAUAUGAGCUUGGUGUGUGAAAAUAGAAGCAAUUCUCA----------GUUCCAG
.....((((((.(((.(.......)))).((((......))))...))))))........(((((.((..(((..........)))...)).)----------))))... ( -23.60)
>DroYak_CAF1 29426 110 - 1
UAUAAUGUUGAAGCCACUCCAAUUGGGCAGGCAAACAAAUACCGAAUCGAUGAAAAAUAUGAGCUUGGUGUUUGAAUGUAGAAACGAAUUCCAAACAUGGACUGCUCAAA
......................(((((((((((..((((((((((.(((((.....)).)))..))))))))))..)))..........((((....)))))))))))). ( -28.40)
>consensus
UAUAACGUAGAAGCCACUCCAAUUGGGCAGGCAAACAAAUACCGAAUCGAUGAAAAAUAUGAGCUUGGUGUUUGAAUGUGGAAACAAUUUCCAAAAAUGGACUGCUCAAA
......................((((((((.....((((((((((.(((((.....)).)))..))))))))))..(((....)))...............)))))))). (-21.72 = -22.04 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:30 2006