Locus 8570

Sequence ID X_DroMel_CAF1
Location 21,229,556 – 21,229,656
Length 100
Max. P 0.950999
window14097

overview

Window 7

Location 21,229,556 – 21,229,656
Length 100
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 82.25
Mean single sequence MFE -27.54
Consensus MFE -17.82
Energy contribution -18.42
Covariance contribution 0.60
Combinations/Pair 1.19
Mean z-score -2.54
Structure conservation index 0.65
SVM decision value 1.41
SVM RNA-class probability 0.950999
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21229556 100 - 22224390
AUCAUCUUAAAGAGCUAGCACAGCAUAAACACACUGCGUAUGCGUAAUGAUAUUUGAAUAUUACGUAUACGU------AAAUUUAAAUGUGAAGUGCAGCUGCCAU
............((((.((((..((((.......(((((((((((((((.........))))))))))))))------)........))))..))))))))..... ( -29.76)
>DroSec_CAF1 42005 104 - 1
UUCAUCUUAAAGAGCCAGCACAGCAGCAAC--ACUGCGUAUGCGUAAUGAUAUUUGAAAAUUUCGUAUACGUAGGGGGAAAUUUAAAUGUGAAGUGCAGCUGCCAU
(((((.(((((...((.((......))...--.(((((((((((.(((...........))).)))))))))))..))...)))))..)))))(.((....))).. ( -25.70)
>DroSim_CAF1 33455 104 - 1
UUCAUCUUAAAGAGCCAGCACAGCAGCAAC--ACUGCGUAUGCGUAAUGAUAUUUGAAAAUUACGUAUACGUCGGGGGAAAUUUAAAUGUGAAGUGCAGCUGCCAU
(((((.(((((...((.((......))...--.(((((((((((((((...........)))))))))))).))).))...)))))..)))))(.((....))).. ( -27.80)
>DroEre_CAF1 27807 94 - 1
UUUAUCUUAAAGAG---------AACCCAC--ACUGCGUAUGCGUAACGAUAUUUGAAUAUUACGUAUACGUAAGAGGAAA-UUAAAUGUGAAGUGCAGCUGCCAU
....((((...)))---------)..((.(--..(((((((((((((.............))))))))))))).).))...-...........(.((....))).. ( -16.62)
>DroYak_CAF1 28758 104 - 1
UUUAUCUUAAAGAGCUGGCGAUGCACUAGC--ACGGCGUAUACGUAAUGUUAUUGAAAAAUUACGUAUACGCAAGAGGUUAUUUAAAUGUGUAGUGCAGCUGCCAU
...............(((((.(((((((.(--((((((((((((((((...........))))))))))))).(((.....)))...)))))))))))..))))). ( -37.80)
>consensus
UUCAUCUUAAAGAGCCAGCACAGCACCAAC__ACUGCGUAUGCGUAAUGAUAUUUGAAAAUUACGUAUACGUAAGAGGAAAUUUAAAUGUGAAGUGCAGCUGCCAU
.............(.((((................(((((((((((((...........)))))))))))))...............(((.....))))))).).. (-17.82 = -18.42 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:29 2006