Locus 8568

Sequence ID X_DroMel_CAF1
Location 21,228,315 – 21,228,422
Length 107
Max. P 0.924989
window14094

overview

Window 4

Location 21,228,315 – 21,228,422
Length 107
Sequences 3
Columns 108
Reading direction reverse
Mean pairwise identity 80.07
Mean single sequence MFE -16.27
Consensus MFE -10.09
Energy contribution -9.87
Covariance contribution -0.22
Combinations/Pair 1.11
Mean z-score -2.43
Structure conservation index 0.62
SVM decision value 1.17
SVM RNA-class probability 0.924989
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21228315 107 - 22224390
UAAAAAGCCGAAUAUAAAUUUUGAUUCGGCAAAGUAGAA-AAAUCGAGUUAAUAUGUAAUACAUAUAUGUACAUAUAUGCACACAGCAAACAAAUAGAUAUUGAUAAU
......(((((((..........))))))).........-.......((((((((.((....((((((....))))))((.....)).......)).))))))))... ( -18.80)
>DroSec_CAF1 37306 85 - 1
UAAAAAGCCGAAUAUAAAUUUUGAUUCGGCAAAGUAGAAAAAAUCGAGUUAGUA-----------------------AGCACACAGUAAAUAAAUCGAUAUUGGUAAU
......(((((((..........)))))))............(((((.(((...-----------------------.((.....))...))).)))))......... ( -14.20)
>DroSim_CAF1 32254 85 - 1
UAAAAAGCCGAAUAUAAAUUUUGAUUCGGCAAAGUAGAAAAAAUCGAGUUAGUA-----------------------AGCACACAGCAAAUAAAUCGAUAUUGGUAAU
......(((((((..........)))))))............(((((.(((...-----------------------.((.....))...))).)))))......... ( -15.80)
>consensus
UAAAAAGCCGAAUAUAAAUUUUGAUUCGGCAAAGUAGAAAAAAUCGAGUUAGUA_______________________AGCACACAGCAAAUAAAUCGAUAUUGGUAAU
......(((((((..........)))))))................................................((.....))..................... (-10.09 =  -9.87 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:26 2006