| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,227,718 – 21,227,821 |
| Length | 103 |
| Max. P | 0.816082 |
| Location | 21,227,718 – 21,227,821 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.03 |
| Mean single sequence MFE | -28.50 |
| Consensus MFE | -19.19 |
| Energy contribution | -19.00 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.816082 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21227718 103 - 22224390 AAACCUAAAAUUUUCAAGCAGCC---CCACAUUAAUGUGGAGCACAUUAGUGCACGUAAGUGUAUUAAGGAUAAUGGAUGCAUUCAUAGAUAUAUCGCCAAGAGGA-------------- ...(((...........(((((.---(((((....))))).))...(((((((((....)))))))))..........))).......((....))......))).-------------- ( -26.00) >DroVir_CAF1 39205 108 - 1 -AAGCUCAAAUUUUAAAGCAGCU--CCAACAUUAAUGUGGAGCACAUUAGUGCACGUAAGUGUAUUAAGGAUAAUGGAUGCACUCAUAGAUAUUUCGCUGUUUGACUCUCU--------- -.((.((((((......((((((--(((.((....))))))))...(((((((((....)))))))))..........))).......((....))...))))))))....--------- ( -28.10) >DroGri_CAF1 32907 118 - 1 AAAACAACAUUUUUCAAGCAGCU--CCCACAUUAAUGUGGAGCACAUUAGUGCACGUAAGUGUAUUAAGGAUAAUGGAUGCACUCAUAGAUAUUUCGCUGUUUGACUGUCUGCAUAUGGA .......((((.(((.....(((--((.(((....))))))))...(((((((((....)))))))))))).)))).(((((..((((((((......))))))..))..)))))..... ( -33.10) >DroYak_CAF1 26950 103 - 1 AAACGUAAAAUUUUCAAGCAGCC---CCACAUUAAUGUGGAGCACAUUAGUGCACGUAAGUGUAUUAAGGAUAAUGGAUGCAUUCAUAGAUAUUUCGCCAAGUGCA-------------- ............((((....((.---(((((....))))).))...(((((((((....)))))))))......))))((((((....((....))....))))))-------------- ( -27.20) >DroMoj_CAF1 38254 119 - 1 GAAGC-CAAAUUUUCAAGCAGCUCUCCCACAUUAAUGUGGAGCACAUUAGUGCGCAUAAGUGUAUUAAGGAUAAUGGAUGCACUCAUAGAUAUUUCACUAUUUGACUGUCUGCAUAUGGA ....(-((....(((.....(((...(((((....))))))))...(((((((((....))))))))))))...)))(((((..((((((((......))))))..))..)))))..... ( -26.60) >DroAna_CAF1 24167 103 - 1 AAACCUAAAAUUUUCAAGCAGAC---CCACAUUAAUGUGGAGCACAUUAGUGCACGUAAGUGUAUUAGGGAUAAUGGAUGCACUCAUAGAUAUUUCGCUAUGAGGC-------------- .................(((..(---(((((....)))))......(((((((((....))))))))).......)..))).(((((((........)))))))..-------------- ( -30.00) >consensus AAACCUAAAAUUUUCAAGCAGCC___CCACAUUAAUGUGGAGCACAUUAGUGCACGUAAGUGUAUUAAGGAUAAUGGAUGCACUCAUAGAUAUUUCGCUAUGUGAC______________ .................(((.((...(((((....)))))......(((((((((....))))))))).......)).)))....................................... (-19.19 = -19.00 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:25 2006