Locus 8566

Sequence ID X_DroMel_CAF1
Location 21,225,117 – 21,225,210
Length 93
Max. P 0.798192
window14092

overview

Window 2

Location 21,225,117 – 21,225,210
Length 93
Sequences 4
Columns 93
Reading direction reverse
Mean pairwise identity 93.55
Mean single sequence MFE -16.62
Consensus MFE -16.11
Energy contribution -15.93
Covariance contribution -0.19
Combinations/Pair 1.06
Mean z-score -1.52
Structure conservation index 0.97
SVM decision value 0.61
SVM RNA-class probability 0.798192
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21225117 93 - 22224390
CUAUCAAAAAAUUUGGCAAAGGAAAUUCCAUUCGUGACCAACUUUUUGCUAAUCCAGGAUUCCGACCUCCUUGGCACUUGCCACACAUAUACA
.............((((((.((.....))....(((.(((...............((((........)))))))))))))))).......... ( -16.46)
>DroSec_CAF1 34125 93 - 1
CUAUCAAAAAAUUUGGCAAAGGAAAUUCCAUUCGUGACCAAAUUUUUGCUAAUCCAGGACUCCGACCUCCUUGGCACUUGCCACACACACACA
......((((((((((((..((.....)).....)).))))))))))........((((........))))((((....)))).......... ( -18.10)
>DroSim_CAF1 28305 91 - 1
CUAUCAAAAAAUUUGGCAAAGGAAAUUCCAUUCGUGACCAACUUUUUGCUAAUCCAGGACUCCGACCUCCUUGGCACUUGCCGCACA--CACA
......(((((.((((((..((.....)).....)).)))).)))))((......((((........)))).(((....)))))...--.... ( -15.80)
>DroEre_CAF1 23551 91 - 1
CUAUCAAAAAAUUUGGCAAAGGAAAUUCCAGUCGUGACCAACUUUUUGCUAAUACAGGAUUCCGACCUUCUUGGCACUUGCCACACACACA--
.............((((((.((.....)).................((((((...(((.......)))..)))))).))))))........-- ( -16.10)
>consensus
CUAUCAAAAAAUUUGGCAAAGGAAAUUCCAUUCGUGACCAACUUUUUGCUAAUCCAGGACUCCGACCUCCUUGGCACUUGCCACACACACACA
.............((((((.((.....)).................((((((...(((.......)))..)))))).)))))).......... (-16.11 = -15.93 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:24 2006