Locus 8565

Sequence ID X_DroMel_CAF1
Location 21,213,112 – 21,213,202
Length 90
Max. P 0.995749
window14091

overview

Window 1

Location 21,213,112 – 21,213,202
Length 90
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 74.53
Mean single sequence MFE -30.02
Consensus MFE -17.68
Energy contribution -20.62
Covariance contribution 2.93
Combinations/Pair 1.05
Mean z-score -2.76
Structure conservation index 0.59
SVM decision value 2.61
SVM RNA-class probability 0.995749
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21213112 90 - 22224390
AUCCUCCUCCGAAGACUCUUCCUCCCAGGAGAGCUCCAGCGAGUCCUCCAGUGAGGCGUCCGCCUAGAA----ACUCGAUCGCCGAGUCCUUCA
..........((((((((.........((((..(((....)))..)))).....((((..((.......----...))..)))))))).)))). ( -28.30)
>DroSec_CAF1 21411 83 - 1
AUCCUCCUCCGAGGACUCUUCCUCCCAGGAGAGCUCCAACGAGUCCUCCAGUGAGGCGUCUGCC-----------UCGAUCGCCGAGUCCUCCA
..........((((((((.........((((..(((....)))..))))..((((((....)))-----------)))......)))))))).. ( -35.00)
>DroSim_CAF1 16926 90 - 1
AUCCUCCUCCGAGGACUCUUCCUCCCAGGAGAGCUCCAACGAGUCCUCCAGUGAGGCGUCCGCCUAGGA----ACUCGAUCGCCGAGUCCUCCA
..........((((((((.........((((..(((....)))..)))).....(((((((.....)))----.......)))))))))))).. ( -34.61)
>DroEre_CAF1 12190 78 - 1
AUCCUCCUCCGAGGACUCUUCCUCCCAGGAGGGCUCCA------------GCUAGGCAGCCGCCUAGGA----ACUCGAUCGCCGAGUCCUCCA
..((((((..(((((....)))))..))))))((....------------))(((((....)))))(((----(((((.....)))))..))). ( -33.10)
>DroYak_CAF1 12586 90 - 1
AUCCUCCUCCGAGGAAGCUUCCUCCCAGGAGAGCUCCAGCGAGUCCUCCAGCGAGGCAUCCGCCUAAAU----ACUCGAUCGCCGAGUCCUCCA
.(((((....)))))............((((..(((..((((.((........((((....))))....----....)))))).)))..)))). ( -30.09)
>DroAna_CAF1 11720 77 - 1
CUCC---------GACUCUAGCUCC------AGCUCCGAGGAGGACUCCAGCGAGGCCUCUGCCUAAUUUUCCACAGGAUAACUGA-UCCU-UA
.(((---------..(((.(((...------.)))..)))..)))........((((....))))..........(((((.....)-))))-.. ( -19.00)
>consensus
AUCCUCCUCCGAGGACUCUUCCUCCCAGGAGAGCUCCAACGAGUCCUCCAGCGAGGCGUCCGCCUAGAA____ACUCGAUCGCCGAGUCCUCCA
..........((((((((.........((((..(((....)))..))))....((((....))))...................)))))))).. (-17.68 = -20.62 +   2.93)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:24 2006