Locus 8562

Sequence ID X_DroMel_CAF1
Location 21,201,088 – 21,201,208
Length 120
Max. P 0.725796
window14084

overview

Window 4

Location 21,201,088 – 21,201,208
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 76.44
Mean single sequence MFE -43.82
Consensus MFE -24.82
Energy contribution -26.35
Covariance contribution 1.53
Combinations/Pair 1.30
Mean z-score -1.69
Structure conservation index 0.57
SVM decision value 0.41
SVM RNA-class probability 0.725796
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21201088 120 + 22224390
AGGGAGCUGGCCGGCGAUCAACUUCGGAUGGCUGCCUAUAGCUGCGAUAGUAUAUCCCAUAUGCUGCAGCUAUACUACCAGUGCACCUAUCAUGGAAGUGUUACAAAUGCGGCAGCCACA
(((..(((((..((((..((.(....).))..))))(((((((((...(((((((...))))))))))))))))...)))))...)))....(((...(((..(....)..))).))).. ( -42.90)
>DroVir_CAF1 1916 120 + 1
CUGGAGCUGGCAGGGCCACAGCUGCGCAUGUCCGCCUAUAAAUGCGACAGCGUCUCCCAGAUGCUCCAAUUGUAUUAUCAGUGUGCCUAUCAUGGCAGUCUGACGCAUGCUGCCGCCACG
.....(.((((.(((((((.(((((((((............))))).))))........(((((.......)))))....))).)))).....((((((.((...)).))))))))))). ( -42.00)
>DroPse_CAF1 1652 120 + 1
CAGGAGACGGCCGGACCCCAGCUACGGAUGGCUGCCUAUGGCUGCAACAGUGUCUCUCAGAUGCUGCAGCUGUACUAUCAGUGCAGCUUCCAUGGCAGUGUCACCAAUGCUGCCUCCACU
..((((.((((.((...(((.(....).)))(((((.((((......(((((((.....))))))).((((((((.....)))))))).))))))))).....))...)))).))))... ( -48.50)
>DroGri_CAF1 8473 120 + 1
UUGGAGCAGGCCGGUUCGCAAAUCUCUAAGGCUGCCUAUCGCUGCAACAGCGUCUCUCAGAUGCUGCAGCUGUACUAUCAGUGCGCUUAUCAUAGCAGUCUGACGCAUGCCGCCUCGACG
..(..(.((((.(((..((...((....(((((((.....((((((...(((((.....))))))))))).((((.....))))..........))))))))).))..))))))))..). ( -41.20)
>DroAna_CAF1 1792 120 + 1
AGGGAGAAGGCCGGCGACCAGAUGCGCAUGGCCGCCUACGGAUGCGACAGUGUCUCCCAGAUGCUGCAGCUCUACUACCAGUGCAGCUACCACGGCAGCGUCACCAAUGCAGCCUCCACA
.((((((.((((((((........))).)))))(((....)..)).......)))))).((((((((((((.(((.....))).))))......)))))))).................. ( -44.10)
>DroPer_CAF1 1639 120 + 1
CAGGAGACGGCCGGACCCCAGCUACGGAUGGCUGCCUAUGGCUGCAACAGUGUCUCUCAGAUGCUUCAGCUGUAUUAUCAGUGCAGCUUCCAUGGCAGUGUCACCAAUGCUGCCUCCACU
..((((.((((.((...(((.(....).)))(((((...((((((...((((((.....))))))...((((......)))))))))).....))))).....))...)))).))))... ( -44.20)
>consensus
CAGGAGAAGGCCGGACCCCAGCUACGGAUGGCUGCCUAUGGCUGCAACAGUGUCUCCCAGAUGCUGCAGCUGUACUAUCAGUGCACCUACCAUGGCAGUGUCACCAAUGCUGCCUCCACA
..((((.((((.(.....)...........(((((((((((((((...((((((.....)))))))))))))))......(((.......))))))))).........)))).))))... (-24.82 = -26.35 +   1.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:18 2006