| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,197,545 – 21,197,641 |
| Length | 96 |
| Max. P | 0.593582 |
| Location | 21,197,545 – 21,197,641 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 73.42 |
| Mean single sequence MFE | -26.52 |
| Consensus MFE | -15.85 |
| Energy contribution | -15.52 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.593582 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21197545 96 - 22224390 ACCAUACGAAUCCCGCCUUAGAUG--------CACAGGA--GCC---AAUGAUGAUUAAACCACAAAUGCAGGGAGUGGGCAGCUGGCAACAGUUGGCGCACGCAUGAC ..(((.(...((((.(((......--------...))).--((.---..((.((.......))))...)).))))((((.((((((....)))))).).)))).))).. ( -25.50) >DroSim_CAF1 17441 96 - 1 ACCAUACGAAUCCCCCCUUAGAUG--------CACAGGA--GCC---AAUGAUGAUAAAACCACAAAUGGAGGGAGUGGGCAGCUGGCAACAGUUGGCUCACGCAUGAC ..(((.(...((((.((......(--------(......--)).---..((.((.......))))...)).))))(((((((((((....))))).))))))).))).. ( -27.30) >DroEre_CAF1 23929 94 - 1 AACAUUCCAAUCCC--AGUAAAUG--------UAUAGGA--GCU---UAUGAUGAUAAAACUAUUAAUGCAGAGAGUGGGCAGCUGGCAACAGUUGGCGCACGCAUGAC ...........(((--(.(...((--------(((...(--(.(---(((....))))..))....)))))...).))))((((((....))))))((....))..... ( -21.20) >DroYak_CAF1 17093 94 - 1 AACAUGCCAAGUAC--AAUAAAUG--------UACAGGA--GCC---AAUGAUGAUAAAACUAUGAAUGUAGGGAGUGGGCAGCUGGCAACAGUUGGCGCACGCAUGAC ..(((((...((((--(.....))--------)))....--...---.............((((....))))...((((.((((((....)))))).).)))))))).. ( -29.00) >DroAna_CAF1 22599 97 - 1 AAUCUUAUAAUCCC--UAUAACUC----UC--UUUAGGAUCGCC---CAAAAUGAUGAAACCU-UACUUCAGGGAGUGGGCAGCUGGCAACAGUUGGCGCACGCAUGAC ..........((((--(.....((----..--(((.((....))---.)))..)).(((....-...))))))))((((.((((((....)))))).).)))....... ( -25.00) >DroPer_CAF1 17873 103 - 1 AA--AGCGAACCCC--UGUUGCUGAAUUCCUGUAGUUGA--GUCCCACAUGAUGUUAAACCCAAAGUGAAAGGGAGUGCGCAUCUGGCAACAGUUGGCGCACGCAUGAC ..--.((....(((--((..(((.((((.....)))).)--))..).(((..((.......))..)))..)))).((((((..(((....)))...))))))))..... ( -31.10) >consensus AACAUACGAAUCCC__AAUAAAUG________UACAGGA__GCC___AAUGAUGAUAAAACCACAAAUGCAGGGAGUGGGCAGCUGGCAACAGUUGGCGCACGCAUGAC .........................................((.................((..........)).(((.(((((((....))))).)).)))))..... (-15.85 = -15.52 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:17 2006