Locus 8560

Sequence ID X_DroMel_CAF1
Location 21,193,685 – 21,193,793
Length 108
Max. P 0.912416
window14082

overview

Window 2

Location 21,193,685 – 21,193,793
Length 108
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 73.34
Mean single sequence MFE -34.47
Consensus MFE -25.09
Energy contribution -24.04
Covariance contribution -1.05
Combinations/Pair 1.42
Mean z-score -1.24
Structure conservation index 0.73
SVM decision value 1.08
SVM RNA-class probability 0.912416
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21193685 108 + 22224390
AUGGUAUUU-CCAA-----------ACCUCAGGCUGCUGCGGACUUGGAUGUGCGUAUCAUGGUGGAUGCGGAGCAGACUUACUUCCAGCCGGCCAUCUCCCGUAUCACCCUGGAAAUGA
.(((.....-))).-----------...(((((.((.(((((....(((((.(((((((......)))))((((.........)))).....))))))).))))).)).)))))...... ( -31.20)
>DroPse_CAF1 12074 119 + 1
CUGGUAUAUUCCACAUCUGAUAUA-UUCCCAGACUGCUGCCGAGCUGGACGUGCGCAUCAUGAUCGAUGCGGAGCAGACCUACUUCCAGCCGGCCAUUUCGCGCAUCACGCUGGAAAUGA
((((((((((........))))))-...))))......((((.((((((.(((.(((((......)))))((......))))).))))))))))(((((((((.....)))..)))))). ( -40.60)
>DroGri_CAF1 21032 113 + 1
UAACU-----GCAA--CCCUUCUUUUCUUCAGACUGCUGCUGAGCUGGAUGUGCGCAUUAUGAUUGAUGCAGAGCAAACUUACUUCCAGCCAGCAAUCUCGCGCAUUACGCUUGAGAUGA
.....-----(((.--..................)))(((((.((((((.((..((((((....)))))).(((....))))).)))))))))))((((((.((.....)).)))))).. ( -33.71)
>DroWil_CAF1 19165 110 + 1
ACGAUUUU----------GCUUUAUUCUCCAGACUGCCGCUGAGCUGGAUGUACGCAUUAUGAUUGAUGCCGAGCAAACCUAUUUCCAGCCAGCCAUUUCGCGCAUCACUUUGGAAAUGA
........----------...(((((.((((((.((((((((.(((((((((.(((((((....))))).)).)))........))))))))))......).)))....))))))))))) ( -27.90)
>DroAna_CAF1 17829 105 + 1
---AUAUUC-UACA-----------CCCCCAGGCUGCUGCCGAGUUGGAUGUCCGUAUUAUGGUGGAUGCGGAGCAAACCUAUUUCCAACCGGCCAUUUCCCGCAUCACCCUGGAGAUGA
---......-..((-----------.(.(((((.(((.((((.((((((((((((((((......)))))))).))........))))))))))........)))....))))).).)). ( -32.70)
>DroPer_CAF1 13748 119 + 1
CUGGUAUAUUCCACAUCUGAUAUA-UUCCCAGACUGCUGCCGAGCUGGACGUGCGCAUCAUGAUCGAUGCGGAGCAGACCUACUUCCAGCCGGCCAUUUCGCGCAUCACGCUGGAGAUGA
((((((((((........))))))-...))))......((((.((((((.(((.(((((......)))))((......))))).))))))))))(((((((((.....)))..)))))). ( -40.70)
>consensus
AUGGUAUUU_CCAA____G_U_UA_UCCCCAGACUGCUGCCGAGCUGGAUGUGCGCAUCAUGAUCGAUGCGGAGCAAACCUACUUCCAGCCGGCCAUUUCGCGCAUCACGCUGGAAAUGA
......................................((((.((((((.(((.(((((......)))))((......))))).))))))))))((((((.............)))))). (-25.09 = -24.04 +  -1.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:16 2006