Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,432,712 – 2,432,886 |
Length | 174 |
Max. P | 0.961456 |
Location | 2,432,712 – 2,432,809 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 80.00 |
Mean single sequence MFE | -17.03 |
Consensus MFE | -14.49 |
Energy contribution | -14.82 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.06 |
Structure conservation index | 0.85 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.601725 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2432712 97 + 22224390 --ACAAUCGGACCGGAAAUGAUCCC----AAAGAUAACCCAGAACCCGACUAUUCCUGCAUCUCCCAUCGACCCACCAAGCAAGCCAGCUGGAAACAGCACA--------------U --....((((...(((.((((((..----...)))....(((.............)))))).)))..))))................((((....))))...--------------. ( -15.92) >DroSim_CAF1 43908 96 + 1 --ACA-UCGGACCGGAAAUGCCCCC----AAAGAUAACCCAGAACCCGACUAUUCCUGCAUCUCCCAUCGACCCACCAAGAAAGCCAGCUGGAAACAGCACA--------------U --...-((((...(((.((((....----............................)))).)))..))))................((((....))))...--------------. ( -16.55) >DroEre_CAF1 80486 116 + 1 UUACA-UCGGACUGGAAAUGCCCCCCAAAAAAGAUAACCCAAAACCCGAUUAAUCCUGCAUCUCCCAUCGACUCACAAAGAAAGCAAGCUGGAGACAGCGCAUACAUAUGUACAUAU .((((-((((...(((.((((....................................)))).)))..))))............((..((((....)))))).......))))..... ( -18.62) >consensus __ACA_UCGGACCGGAAAUGCCCCC____AAAGAUAACCCAGAACCCGACUAUUCCUGCAUCUCCCAUCGACCCACCAAGAAAGCCAGCUGGAAACAGCACA______________U ......((((...(((.((((....................................)))).)))..))))................((((....)))).................. (-14.49 = -14.82 + 0.33)
Location | 2,432,743 – 2,432,846 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.05 |
Mean single sequence MFE | -17.45 |
Consensus MFE | -13.97 |
Energy contribution | -13.97 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.24 |
Structure conservation index | 0.80 |
SVM decision value | 1.53 |
SVM RNA-class probability | 0.961456 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2432743 103 + 22224390 CCCAGAACCCGACUAUUCCUGCAUCUCCCAUCGACCCACCAAGCAAGCCAGCUGGAAACAGCACA--------------UAUGUAAAAUA-CCCCAACAAAAUAUCGCAGU--UCUUAUA ...(((((.(((.((((..(((....................))).....((((....))))...--------------...........-.........)))))))..))--))).... ( -15.45) >DroSim_CAF1 43938 103 + 1 CCCAGAACCCGACUAUUCCUGCAUCUCCCAUCGACCCACCAAGAAAGCCAGCUGGAAACAGCACA--------------UAUGUAAAUUA-CCCCAACAAAAUAUCGCAGU--UCUAAUC ...(((((.(((.((((.................................((((....))))((.--------------...))......-.........)))))))..))--))).... ( -14.80) >DroEre_CAF1 80522 120 + 1 CCCAAAACCCGAUUAAUCCUGCAUCUCCCAUCGACUCACAAAGAAAGCAAGCUGGAGACAGCGCAUACAUAUGUACAUAUAUGUAAAUUUCCCCCAACAAAAUAUUGCAGAUAUCUAAUU ..................(((((.......................((..((((....)))))).((((((((....))))))))....................))))).......... ( -22.10) >consensus CCCAGAACCCGACUAUUCCUGCAUCUCCCAUCGACCCACCAAGAAAGCCAGCUGGAAACAGCACA______________UAUGUAAAUUA_CCCCAACAAAAUAUCGCAGU__UCUAAUA ..................((((............................((((....))))...................(((............))).......)))).......... (-13.97 = -13.97 + 0.00)
Location | 2,432,783 – 2,432,886 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.05 |
Mean single sequence MFE | -20.13 |
Consensus MFE | -14.48 |
Energy contribution | -14.03 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.06 |
Mean z-score | -1.51 |
Structure conservation index | 0.72 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.534241 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2432783 103 + 22224390 AAGCAAGCCAGCUGGAAACAGCACA--------------UAUGUAAAAUA-CCCCAACAAAAUAUCGCAGU--UCUUAUACCCAAGAUCAUUUUGAACAGAAAGUAAGCUCAUUGUUUUG ((((((((..((((....))))...--------------...........-......(((((((((...((--......))....))).))))))............)))...))))).. ( -17.20) >DroSim_CAF1 43978 103 + 1 AAGAAAGCCAGCUGGAAACAGCACA--------------UAUGUAAAUUA-CCCCAACAAAAUAUCGCAGU--UCUAAUCCCCAAGAUCAUUUCGAACAGAAAGUAAGCUCAUUGUUUUG ..........((((....))))...--------------...........-......(((((((..((.(.--(((........))).).((((.....))))....))....))))))) ( -16.40) >DroEre_CAF1 80562 119 + 1 AAGAAAGCAAGCUGGAGACAGCGCAUACAUAUGUACAUAUAUGUAAAUUUCCCCCAACAAAAUAUUGCAGAUAUCUAAUUCCUAAGAUCAUUUCGAACCGAAAGUAAGCUCAUGGUUUU- ..((((((((((((....))))...((((((((....))))))))...................))))....((((........))))..))))((((((..((....))..)))))).- ( -26.80) >consensus AAGAAAGCCAGCUGGAAACAGCACA______________UAUGUAAAUUA_CCCCAACAAAAUAUCGCAGU__UCUAAUACCCAAGAUCAUUUCGAACAGAAAGUAAGCUCAUUGUUUUG ......((..((((....))))...................(((............))).......))..........................((((((..((....))..)))))).. (-14.48 = -14.03 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:23 2006