Locus 8559

Sequence ID X_DroMel_CAF1
Location 21,190,727 – 21,190,819
Length 92
Max. P 0.579685
window14081

overview

Window 1

Location 21,190,727 – 21,190,819
Length 92
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 79.82
Mean single sequence MFE -22.00
Consensus MFE -15.11
Energy contribution -15.50
Covariance contribution 0.39
Combinations/Pair 1.06
Mean z-score -1.24
Structure conservation index 0.69
SVM decision value 0.09
SVM RNA-class probability 0.579685
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21190727 92 + 22224390
UGGCCGGCGAGAAUCGUCACACGAUCGUGCCCGCCCUAGAGAGGUUAAC--CCCCUCCCCCUACCCAAGAGCAUCCCAUGC------AUCCCAA----UAUAUA
.(((.((((.((.(((.....))))).)))).))).....((((.....--..)))).............((((...))))------.......----...... ( -21.10)
>DroGri_CAF1 17414 89 + 1
UGGCCGGCGAAAAUCGCCACACGAUUGUGCCCACGCUUGAGAGGUGCCCAAACCGUAUCCGUACCCUA----AGCCCAUGCCUAAUCAUCCAA-----------
(((..((((.....))))....(((((.((....((((.((.(((((.............))))))))----)))....)).)))))..))).----------- ( -25.22)
>DroSec_CAF1 18547 91 + 1
UGGCCGGCGAGAAUCGUCACACGAUCGUGCCCGCCCUAGAGAGGUUAAC--CCCCUCCCCCUACCCCACAGCACCCCAUGC------AUCCCAA----UAUAU-
.(((.((((.((.(((.....))))).)))).))).....((((.....--..)))).............(((.....)))------.......----.....- ( -20.70)
>DroSim_CAF1 10798 92 + 1
UGGCCGGCGAGAAUCGUCACACGAUCGUGCCCGCCCUCGAGAGGUUAAC--CCCCUCCCCCUACCCCACAGCACCCCAUGC------AUCCCAA----UAUAUA
.(((.((((.((.(((.....))))).)))).)))...(((.((.....--.))))).............(((.....)))------.......----...... ( -20.80)
>DroEre_CAF1 17128 86 + 1
UGGCCGGCGAGAAUCGUCACACGAUCGUGCCCGCCUUAGAGAGGUUAAC--ACCCUCCCCCUAAAACACUGCACCCCAUGC------ACCCCAU----------
.(((.((((.((.(((.....))))).)))).)))...(((.(((....--))))))............((((.....)))------)......---------- ( -22.50)
>DroYak_CAF1 10267 96 + 1
UGGCCGGCGAGAAUCGUCACACGAUCGUGCCCGCCCUAGAGAGGUUAAC--CCCCUCCCCCUACCCCACUGCACCCCAUGC------ACCCCAUGCAACCCAUG
.(((.((((.((.(((.....))))).)))).))).....((((.....--..))))............((((.....)))------)...((((.....)))) ( -21.70)
>consensus
UGGCCGGCGAGAAUCGUCACACGAUCGUGCCCGCCCUAGAGAGGUUAAC__CCCCUCCCCCUACCCCACAGCACCCCAUGC______AUCCCAA____UAUAU_
.(((.((((.((.(((.....))))).)))).)))...(((.((........)))))............................................... (-15.11 = -15.50 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:15 2006