| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,187,403 – 21,187,497 |
| Length | 94 |
| Max. P | 0.620315 |
| Location | 21,187,403 – 21,187,497 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 82.02 |
| Mean single sequence MFE | -22.63 |
| Consensus MFE | -15.61 |
| Energy contribution | -15.50 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.620315 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21187403 94 + 22224390 UUGGUCCAAUCCAUCGACUAGCUGAGAUCUCUCUCUCUCUCUCUAGCUCUCUGUUUCUGGUUCUGUUUGCUGAGAAAUCUGGGGCUCUGUUAGU .(((......)))...((((((.((((......)))).......((((((..(((((((((.......))).))))))..))))))..)))))) ( -23.20) >DroSec_CAF1 15386 79 + 1 UUGGUCUAAAGCAUCGACUAGCUGAGCAUCC---------------CUCUCUGUUUCUGGUUCUUUUUGCUGAGAAAUCUGGGGCUCUGUUAGU ................((((((.((((..((---------------(.....(((((((((.......))).))))))..))))))).)))))) ( -20.60) >DroSim_CAF1 7606 79 + 1 UUGGUCUAAACCAUCGACUAGCUGAGCACCC---------------CUCUCUGUUUCUGGUUCAUUUUGCUGAGAAAUCUGGGGCUCUGUUAGU .((((....))))...((((((.((((.(((---------------......(((((((((.......))).))))))..))))))).)))))) ( -24.10) >consensus UUGGUCUAAACCAUCGACUAGCUGAGCACCC_______________CUCUCUGUUUCUGGUUCUUUUUGCUGAGAAAUCUGGGGCUCUGUUAGU ................((((((.((((.(((.....................(((((((((.......))).))))))..))))))).)))))) (-15.61 = -15.50 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:14 2006