Locus 8557

Sequence ID X_DroMel_CAF1
Location 21,187,073 – 21,187,167
Length 94
Max. P 0.597968
window14079

overview

Window 9

Location 21,187,073 – 21,187,167
Length 94
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 77.09
Mean single sequence MFE -37.87
Consensus MFE -20.10
Energy contribution -23.30
Covariance contribution 3.20
Combinations/Pair 1.17
Mean z-score -1.74
Structure conservation index 0.53
SVM decision value 0.13
SVM RNA-class probability 0.597968
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21187073 94 + 22224390
UCCUGCACAGCGGCGACCGGCCGCUGCAGGCCUCCACUCUGGUCCAACCGGAGGUGGUCUCCAGCGAGACGGUGAAGCGAUCGAUGAAGCAGGA
((((((.((.(((((((((.((((((.(((((....((((((.....))))))..))))).))))).).))))....)).))).))..)))))) ( -44.10)
>DroSec_CAF1 15056 94 + 1
UCUUGCACAGCGGCGAACGGCCGUUGCAGGCCUCCACUCUGGUCCAACCGGAGCUGGUCUCCAGCGAGUCGUUGAAGCGAUCGAUGAAGCAGCA
.(((((.(((((((.....)))))))..((...(((((((((.....)))))).)))...)).)))))(((((((.....)))))))....... ( -38.20)
>DroSim_CAF1 7276 94 + 1
UCUUGCACAGCGGCGAACGGCCGUUGCAGGCCUCCACUCUGGUCCAACCGGAGCUGGUCUCCAGCGAGACGUUGAAGCGAUCGAUGAAGCAGGA
((((((.(((((((.....)))))))..((...(((((((((.....)))))).)))...)).))))))((((((.....))))))........ ( -38.60)
>DroEre_CAF1 13481 94 + 1
UCCUGCACAGCGGCGAACGGCCGCUGCAGGCCUCCGCUCUGGUACAACCGGAUUUGGUGGCCGGCGAUACGGUGAAGCGAUCGAUGAAGCAGGA
((((((.(((((((.....)))))))..((((.(((.(((((.....)))))..))).))))..((((.((......)))))).....)))))) ( -46.20)
>DroYak_CAF1 6670 94 + 1
UCCUCCACAGCGGCGAACGGCCGUUGCAGGCCUCCGCUGUGGUACAACCGGAGCUGGUGUCCGGCGAGACGGUGAAGCGAUCGACGAAGCAGGA
(((((((((((((.....((((......)))).)))))))))....((((..(((((...)))))....))))...((..........)))))) ( -39.70)
>DroAna_CAF1 12154 76 + 1
UCCUACACUCCGGCGAU---------AAGGCCUCCACCGCCGCCCAACCGGC--CUAUGCCGAGCCCGCCGUAAAG-------ACGGACCAAAA
(((.......(((((..---------..(((.......))).......((((--....))))....))))).....-------..)))...... ( -20.44)
>consensus
UCCUGCACAGCGGCGAACGGCCGUUGCAGGCCUCCACUCUGGUCCAACCGGAGCUGGUCUCCAGCGAGACGGUGAAGCGAUCGAUGAAGCAGGA
((((((.(((((((.....)))))))..((...(((((((((.....)))))).)))...))..........................)))))) (-20.10 = -23.30 +   3.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:13 2006