| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,185,165 – 21,185,265 |
| Length | 100 |
| Max. P | 0.859693 |
| Location | 21,185,165 – 21,185,265 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 78.22 |
| Mean single sequence MFE | -22.36 |
| Consensus MFE | -13.47 |
| Energy contribution | -14.19 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.859693 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21185165 100 + 22224390 UUUUCUACUUUUCUCGCAGGCUGCUGUGAGAAGUUUGUCAAACAAACACGAGUUUUUCCGAAAAACUAUAUUUGGCAAUUCUACAAAUUCUACAAAAUUG---------------- ..........(((((((((....)))))))))(((((.....)))))..(((((...(((((........))))).)))))...................---------------- ( -21.50) >DroSec_CAF1 13243 86 + 1 UUUUCUACUUUUCUCGCAGGCUGCUGUGAGAAGUUUGUCAA----ACACGAGUUUUUUCGGAAAAAU-UAUUUGGCGAUUGU---------ACAAAAUUU---------------- ((((.(((.((((((((((....)))))))))).(((((((----(....(((((((....))))))-).))))))))..))---------).))))...---------------- ( -21.60) >DroSim_CAF1 5381 86 + 1 UUUUCUACUUUUCUCGCAGGCUGCUGUGAGAAGUUUGUCAA----ACACGAGUUUUUCCGGAAAAAU-UAUUUGGCGAUUGU---------ACAAAAUUU---------------- ((((.(((.((((((((((....)))))))))).(((((((----(....(((((((....))))))-).))))))))..))---------).))))...---------------- ( -22.30) >DroEre_CAF1 11492 105 + 1 UUUUCUACUUACCUCGCAGGCUGCUGUGAGAAGUUUGUCAAACAAACAAGAGUUUUUCCGGAAAG-C-UGUUUGGCGAUUGU---------ACAAAAUUUUCAACAAACAAUUUUA ((((((((((..(((((((....)))))))..(((((.....)))))..))))......))))))-.-((((((..((..((---------.....))..))..))))))...... ( -23.50) >DroYak_CAF1 4710 105 + 1 UUUUCUACUUCUCUUGCAUGCUGCUGUGAGAAGUUUGUCAAACAAACACGAGUUUUUCCGGAAAA-C-UGUUUGGCGAUUGU---------ACAAAAUUUUCAACAAAGAAUUUUA ......(((((((..((.....))...)))))))((((((((((....((........)).....-.-))))))))))....---------..((((((((......)))))))). ( -22.90) >consensus UUUUCUACUUUUCUCGCAGGCUGCUGUGAGAAGUUUGUCAAACAAACACGAGUUUUUCCGGAAAA_U_UAUUUGGCGAUUGU_________ACAAAAUUU________________ .........((((((((((....))))))))))(((((.........((((......(((((........)))))...)))).........))))).................... (-13.47 = -14.19 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:12 2006