| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 21,179,262 – 21,179,363 |
| Length | 101 |
| Max. P | 0.950235 |
| Location | 21,179,262 – 21,179,363 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 93.44 |
| Mean single sequence MFE | -23.40 |
| Consensus MFE | -21.83 |
| Energy contribution | -22.17 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.93 |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.950235 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21179262 101 + 22224390 UUUGCCAGGUGGCAACCCUGCUACCGCGAUCCUCUUC-CCUCUCUUUCCAUCCAAAAAUGUCCACAAUACAAAACAAAGGCAGUGCGUUGCUCGCACAAACA ..((((.(((((((....)))))))..((......))-........................................))))(((((.....)))))..... ( -24.60) >DroSec_CAF1 5456 100 + 1 UUUGCCAGGUGGCAACGUUGCUACCGCGAUCCUCUUC-CCUCUCUUUCCAUCCAAAAAUGUCCAC-AUACAAAACAAAGGCAGUGCGUUGCUCGCACAAACA ..((((.(((((((....)))))))............-...................(((....)-))..........))))(((((.....)))))..... ( -25.20) >DroEre_CAF1 5568 101 + 1 UUUGCCAGGUGGCAACGCUGGUACCACGAUCCUCUUCCCCUCUCUUUCCCUCCAAAAAUGUCCACAAU-AACAACAAAGGCAGUGCGUUGCUCGCACAAACA ..((((.((((.((....)).)))).................................(((.......-.))).....))))(((((.....)))))..... ( -20.40) >consensus UUUGCCAGGUGGCAACGCUGCUACCGCGAUCCUCUUC_CCUCUCUUUCCAUCCAAAAAUGUCCACAAUACAAAACAAAGGCAGUGCGUUGCUCGCACAAACA ..((((.(((((((....)))))))..((......)).........................................))))(((((.....)))))..... (-21.83 = -22.17 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:08 2006